Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 C2orf69P2-201ENST00000562032 1123 ntBASIC19.5■□□□□ 0.71
SYNE4Q8N205 DERL2-202ENST00000570848 657 ntTSL 5 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 AL139384.1-201ENST00000612143 3047 ntBASIC19.5■□□□□ 0.71
SYNE4Q8N205 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE4Q8N205 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SYNE4Q8N205 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE4Q8N205 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE4Q8N205 MTHFR-217ENST00000641820 1569 ntBASIC19.49■□□□□ 0.71
SYNE4Q8N205 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE4Q8N205 ACKR1-201ENST00000368121 1240 ntBASIC19.49■□□□□ 0.71
SYNE4Q8N205 BRF1-202ENST00000379932 884 ntTSL 5 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE4Q8N205 RPL8-205ENST00000527914 551 ntTSL 3 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 AC079316.1-201ENST00000548397 411 ntBASIC19.49■□□□□ 0.71
SYNE4Q8N205 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 RN7SL560P-201ENST00000577943 264 ntBASIC19.49■□□□□ 0.71
SYNE4Q8N205 KSR1-207ENST00000578981 748 ntTSL 4 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 UBL5-208ENST00000593087 320 ntTSL 3 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 AC093813.1-201ENST00000605066 256 ntBASIC19.49■□□□□ 0.71
SYNE4Q8N205 AC091271.1-201ENST00000611877 1162 ntBASIC19.49■□□□□ 0.71
SYNE4Q8N205 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE4Q8N205 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE4Q8N205 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE4Q8N205 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE4Q8N205 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE4Q8N205 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE4Q8N205 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE4Q8N205 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
SYNE4Q8N205 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE4Q8N205 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE4Q8N205 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 LINC02447-202ENST00000501888 2146 ntBASIC19.48■□□□□ 0.71
SYNE4Q8N205 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 AC010491.1-201ENST00000563101 2797 ntBASIC19.48■□□□□ 0.71
SYNE4Q8N205 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 RIT1-205ENST00000539040 919 ntTSL 2 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 SUPT20HL2-201ENST00000486479 2409 ntBASIC19.48■□□□□ 0.71
SYNE4Q8N205 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms