Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
USP54Q70EL1 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP54Q70EL1 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP54Q70EL1 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP54Q70EL1 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC20.54■□□□□ 0.88
USP54Q70EL1 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC20.54■□□□□ 0.88
USP54Q70EL1 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC20.54■□□□□ 0.88
USP54Q70EL1 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP54Q70EL1 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
USP54Q70EL1 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
USP54Q70EL1 SLC25A24P2-201ENST00000415059 510 ntBASIC20.54■□□□□ 0.88
USP54Q70EL1 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC20.54■□□□□ 0.88
USP54Q70EL1 AC022616.1-201ENST00000518688 554 ntBASIC20.54■□□□□ 0.88
USP54Q70EL1 AC009955.4-201ENST00000597192 544 ntBASIC20.54■□□□□ 0.88
USP54Q70EL1 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC20.54■□□□□ 0.88
USP54Q70EL1 AL358472.3-201ENST00000608147 415 ntBASIC20.54■□□□□ 0.88
USP54Q70EL1 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC20.54■□□□□ 0.88
USP54Q70EL1 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC20.54■□□□□ 0.88
USP54Q70EL1 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP54Q70EL1 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC20.54■□□□□ 0.88
USP54Q70EL1 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP54Q70EL1 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP54Q70EL1 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
USP54Q70EL1 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP54Q70EL1 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP54Q70EL1 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC20.53■□□□□ 0.88
USP54Q70EL1 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC20.53■□□□□ 0.88
USP54Q70EL1 NKAIN1P1-201ENST00000435754 582 ntBASIC20.53■□□□□ 0.88
USP54Q70EL1 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC20.53■□□□□ 0.88
USP54Q70EL1 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC20.53■□□□□ 0.88
USP54Q70EL1 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC20.53■□□□□ 0.88
USP54Q70EL1 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC20.53■□□□□ 0.88
USP54Q70EL1 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP54Q70EL1 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP54Q70EL1 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP54Q70EL1 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP54Q70EL1 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP54Q70EL1 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP54Q70EL1 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
USP54Q70EL1 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP54Q70EL1 AC010141.1-201ENST00000411585 623 ntBASIC20.52■□□□□ 0.88
USP54Q70EL1 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP54Q70EL1 AC138696.2-201ENST00000607376 223 ntBASIC20.52■□□□□ 0.88
USP54Q70EL1 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC20.52■□□□□ 0.88
USP54Q70EL1 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC20.52■□□□□ 0.88
USP54Q70EL1 AP001505.2-201ENST00000616815 443 ntBASIC20.52■□□□□ 0.88
USP54Q70EL1 AC015967.2-201ENST00000624092 234 ntBASIC20.52■□□□□ 0.88
USP54Q70EL1 AC006435.4-201ENST00000625037 234 ntBASIC20.52■□□□□ 0.88
USP54Q70EL1 AL356737.1-201ENST00000634391 234 ntBASIC20.52■□□□□ 0.88
USP54Q70EL1 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP54Q70EL1 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP54Q70EL1 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP54Q70EL1 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP54Q70EL1 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP54Q70EL1 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC20.52■□□□□ 0.88
USP54Q70EL1 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC20.52■□□□□ 0.88
USP54Q70EL1 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP54Q70EL1 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP54Q70EL1 STK33-217ENST00000534493 1895 ntTSL 2 BASIC20.52■□□□□ 0.88
USP54Q70EL1 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP54Q70EL1 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
USP54Q70EL1 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC20.52■□□□□ 0.87
USP54Q70EL1 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC20.52■□□□□ 0.87
USP54Q70EL1 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
USP54Q70EL1 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.87
USP54Q70EL1 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
USP54Q70EL1 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
USP54Q70EL1 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC20.51■□□□□ 0.87
USP54Q70EL1 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP54Q70EL1 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC20.51■□□□□ 0.87
USP54Q70EL1 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP54Q70EL1 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC20.51■□□□□ 0.87
USP54Q70EL1 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP54Q70EL1 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
USP54Q70EL1 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC20.51■□□□□ 0.87
USP54Q70EL1 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP54Q70EL1 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP54Q70EL1 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP54Q70EL1 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC20.51■□□□□ 0.87
USP54Q70EL1 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP54Q70EL1 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP54Q70EL1 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP54Q70EL1 AC132192.2-201ENST00000596206 1147 ntBASIC20.51■□□□□ 0.87
USP54Q70EL1 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC20.51■□□□□ 0.87
USP54Q70EL1 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP54Q70EL1 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP54Q70EL1 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC20.5■□□□□ 0.87
USP54Q70EL1 PCDHA14-201ENST00000506751 2298 ntBASIC20.5■□□□□ 0.87
USP54Q70EL1 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
USP54Q70EL1 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC20.5■□□□□ 0.87
USP54Q70EL1 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms