Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
NEK3P51956 U82695.1-201ENST00000635752 1889 ntBASIC16.37■□□□□ 0.21
NEK3P51956 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
NEK3P51956 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.37■□□□□ 0.21
NEK3P51956 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.37■□□□□ 0.21
NEK3P51956 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
NEK3P51956 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
NEK3P51956 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.36■□□□□ 0.21
NEK3P51956 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 CETN4P-206ENST00000642099 2168 ntBASIC16.36■□□□□ 0.21
NEK3P51956 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.36■□□□□ 0.21
NEK3P51956 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.36■□□□□ 0.21
NEK3P51956 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.36■□□□□ 0.21
NEK3P51956 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.36■□□□□ 0.21
NEK3P51956 AC061975.2-201ENST00000581722 295 ntBASIC16.36■□□□□ 0.21
NEK3P51956 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.36■□□□□ 0.21
NEK3P51956 LINC02084-201ENST00000606069 1096 ntBASIC16.36■□□□□ 0.21
NEK3P51956 AL138828.2-201ENST00000615812 383 ntBASIC16.36■□□□□ 0.21
NEK3P51956 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
NEK3P51956 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.36■□□□□ 0.21
NEK3P51956 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 AC023157.3-201ENST00000619086 2088 ntBASIC16.36■□□□□ 0.21
NEK3P51956 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 AC100757.3-201ENST00000622361 1406 ntBASIC16.36■□□□□ 0.21
NEK3P51956 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NEK3P51956 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
NEK3P51956 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
NEK3P51956 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.35■□□□□ 0.21
NEK3P51956 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.35■□□□□ 0.21
NEK3P51956 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.35■□□□□ 0.21
NEK3P51956 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
NEK3P51956 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.35■□□□□ 0.21
NEK3P51956 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
NEK3P51956 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.35■□□□□ 0.21
NEK3P51956 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.35■□□□□ 0.21
NEK3P51956 BANF1P1-201ENST00000553684 263 ntBASIC16.35■□□□□ 0.21
NEK3P51956 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.35■□□□□ 0.21
NEK3P51956 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.35■□□□□ 0.21
NEK3P51956 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 AL589739.1-201ENST00000607720 493 ntBASIC16.35■□□□□ 0.21
NEK3P51956 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
NEK3P51956 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.35■□□□□ 0.21
NEK3P51956 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.35■□□□□ 0.21
NEK3P51956 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
NEK3P51956 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.35■□□□□ 0.21
NEK3P51956 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
NEK3P51956 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
NEK3P51956 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.34■□□□□ 0.21
NEK3P51956 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.34■□□□□ 0.21
NEK3P51956 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.34■□□□□ 0.21
NEK3P51956 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.34■□□□□ 0.21
NEK3P51956 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.34■□□□□ 0.21
NEK3P51956 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 AC020658.6-201ENST00000623564 1870 ntBASIC16.34■□□□□ 0.21
NEK3P51956 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.34■□□□□ 0.21
NEK3P51956 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.34■□□□□ 0.21
NEK3P51956 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
NEK3P51956 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.34■□□□□ 0.21
NEK3P51956 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.34■□□□□ 0.21
NEK3P51956 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
NEK3P51956 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.34■□□□□ 0.21
NEK3P51956 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.34■□□□□ 0.21
NEK3P51956 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.34■□□□□ 0.21
NEK3P51956 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
NEK3P51956 AC026979.3-201ENST00000607315 403 ntBASIC16.34■□□□□ 0.21
NEK3P51956 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms