Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
CXCL12P48061 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL12P48061 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
CXCL12P48061 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.58■□□□□ 0.08
CXCL12P48061 AC079178.1-201ENST00000420915 656 ntBASIC15.58■□□□□ 0.08
CXCL12P48061 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC15.58■□□□□ 0.08
CXCL12P48061 AL133466.1-201ENST00000447582 150 ntBASIC15.58■□□□□ 0.08
CXCL12P48061 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL12P48061 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CXCL12P48061 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL12P48061 CHMP4BP1-201ENST00000556017 588 ntBASIC15.58■□□□□ 0.08
CXCL12P48061 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL12P48061 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15.58■□□□□ 0.08
CXCL12P48061 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC15.58■□□□□ 0.08
CXCL12P48061 AC244157.2-201ENST00000616239 1006 ntBASIC15.58■□□□□ 0.08
CXCL12P48061 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.58■□□□□ 0.08
CXCL12P48061 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL12P48061 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL12P48061 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL12P48061 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL12P48061 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC15.58■□□□□ 0.08
CXCL12P48061 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL12P48061 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CXCL12P48061 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CXCL12P48061 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL12P48061 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CXCL12P48061 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL12P48061 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CXCL12P48061 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC15.57■□□□□ 0.08
CXCL12P48061 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC15.57■□□□□ 0.08
CXCL12P48061 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.57■□□□□ 0.08
CXCL12P48061 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.57■□□□□ 0.08
CXCL12P48061 ATP6V0CP2-201ENST00000469409 207 ntBASIC15.57■□□□□ 0.08
CXCL12P48061 TSACC-208ENST00000481479 741 ntTSL 2 BASIC15.57■□□□□ 0.08
CXCL12P48061 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 COX5BP1-201ENST00000507622 393 ntBASIC15.57■□□□□ 0.08
CXCL12P48061 AC245884.6-201ENST00000515672 1067 ntBASIC15.57■□□□□ 0.08
CXCL12P48061 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.57■□□□□ 0.08
CXCL12P48061 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 MIR4706-201ENST00000582134 82 ntBASIC15.57■□□□□ 0.08
CXCL12P48061 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC15.57■□□□□ 0.08
CXCL12P48061 AC007663.3-201ENST00000609632 465 ntBASIC15.57■□□□□ 0.08
CXCL12P48061 AC138649.2-201ENST00000615886 705 ntBASIC15.57■□□□□ 0.08
CXCL12P48061 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
CXCL12P48061 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.57■□□□□ 0.08
CXCL12P48061 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.57■□□□□ 0.08
CXCL12P48061 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
CXCL12P48061 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
CXCL12P48061 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CXCL12P48061 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.57■□□□□ 0.08
CXCL12P48061 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.57■□□□□ 0.08
CXCL12P48061 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 AC018892.3-201ENST00000623986 2499 ntBASIC15.57■□□□□ 0.08
CXCL12P48061 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL12P48061 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.57■□□□□ 0.08
CXCL12P48061 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.57■□□□□ 0.08
CXCL12P48061 AL023775.1-201ENST00000454907 1746 ntBASIC15.57■□□□□ 0.08
CXCL12P48061 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
CXCL12P48061 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.57■□□□□ 0.08
CXCL12P48061 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.56■□□□□ 0.08
CXCL12P48061 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.56■□□□□ 0.08
CXCL12P48061 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC15.56■□□□□ 0.08
CXCL12P48061 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC15.56■□□□□ 0.08
CXCL12P48061 CYP46A4P-201ENST00000414953 267 ntBASIC15.56■□□□□ 0.08
CXCL12P48061 DEF8-202ENST00000418391 852 ntTSL 2 BASIC15.56■□□□□ 0.08
CXCL12P48061 HNRNPA1P63-201ENST00000427917 963 ntBASIC15.56■□□□□ 0.08
CXCL12P48061 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 TMEM198B-204ENST00000484016 896 ntBASIC15.56■□□□□ 0.08
CXCL12P48061 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.56■□□□□ 0.08
CXCL12P48061 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC15.56■□□□□ 0.08
CXCL12P48061 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC15.56■□□□□ 0.08
CXCL12P48061 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC15.56■□□□□ 0.08
CXCL12P48061 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.56■□□□□ 0.08
CXCL12P48061 AC091812.3-201ENST00000621362 345 ntBASIC15.56■□□□□ 0.08
CXCL12P48061 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.56■□□□□ 0.08
CXCL12P48061 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms