Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.22■□□□□ 0.83
RXRBP28702 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
RXRBP28702 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
RXRBP28702 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RXRBP28702 KRT8P14-201ENST00000414254 1442 ntBASIC20.21■□□□□ 0.83
RXRBP28702 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RXRBP28702 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RXRBP28702 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
RXRBP28702 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RXRBP28702 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RXRBP28702 AC092638.2-201ENST00000441105 947 ntBASIC20.21■□□□□ 0.83
RXRBP28702 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RXRBP28702 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC20.21■□□□□ 0.83
RXRBP28702 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC20.21■□□□□ 0.83
RXRBP28702 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC20.21■□□□□ 0.83
RXRBP28702 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC20.21■□□□□ 0.83
RXRBP28702 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC20.21■□□□□ 0.83
RXRBP28702 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC20.21■□□□□ 0.83
RXRBP28702 MIR6769A-201ENST00000617340 73 ntBASIC20.21■□□□□ 0.83
RXRBP28702 AC025262.2-201ENST00000623975 1056 ntBASIC20.21■□□□□ 0.83
RXRBP28702 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RXRBP28702 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RXRBP28702 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RXRBP28702 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.2■□□□□ 0.83
RXRBP28702 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RXRBP28702 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
RXRBP28702 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RXRBP28702 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC20.2■□□□□ 0.82
RXRBP28702 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC20.2■□□□□ 0.82
RXRBP28702 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RXRBP28702 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
RXRBP28702 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.2■□□□□ 0.82
RXRBP28702 GGT3P-204ENST00000453783 1664 ntBASIC20.2■□□□□ 0.82
RXRBP28702 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RXRBP28702 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.2■□□□□ 0.82
RXRBP28702 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RXRBP28702 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC20.2■□□□□ 0.82
RXRBP28702 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC20.2■□□□□ 0.82
RXRBP28702 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC20.2■□□□□ 0.82
RXRBP28702 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC20.2■□□□□ 0.82
RXRBP28702 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC20.2■□□□□ 0.82
RXRBP28702 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC20.2■□□□□ 0.82
RXRBP28702 VDAC1P1-201ENST00000439229 848 ntBASIC20.2■□□□□ 0.82
RXRBP28702 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC20.2■□□□□ 0.82
RXRBP28702 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC20.2■□□□□ 0.82
RXRBP28702 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RXRBP28702 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RXRBP28702 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RXRBP28702 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RXRBP28702 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.2■□□□□ 0.82
RXRBP28702 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC20.2■□□□□ 0.82
RXRBP28702 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RXRBP28702 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RXRBP28702 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RXRBP28702 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RXRBP28702 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RXRBP28702 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RXRBP28702 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RXRBP28702 AC098818.2-201ENST00000564925 2320 ntBASIC20.19■□□□□ 0.82
RXRBP28702 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.19■□□□□ 0.82
RXRBP28702 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RXRBP28702 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RXRBP28702 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RXRBP28702 LSM5-207ENST00000410044 687 ntTSL 3 BASIC20.19■□□□□ 0.82
RXRBP28702 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC20.19■□□□□ 0.82
RXRBP28702 FAM58BP-201ENST00000439056 645 ntBASIC20.19■□□□□ 0.82
RXRBP28702 CCNC-217ENST00000523985 958 ntTSL 2 BASIC20.19■□□□□ 0.82
RXRBP28702 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RXRBP28702 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC20.19■□□□□ 0.82
RXRBP28702 NUDT4P2-201ENST00000578341 546 ntBASIC20.19■□□□□ 0.82
RXRBP28702 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC20.19■□□□□ 0.82
RXRBP28702 AC008805.1-201ENST00000590892 364 ntBASIC20.19■□□□□ 0.82
RXRBP28702 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC20.19■□□□□ 0.82
RXRBP28702 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RXRBP28702 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RXRBP28702 AMT-224ENST00000635808 1610 ntTSL 5 BASIC20.19■□□□□ 0.82
RXRBP28702 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
RXRBP28702 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RXRBP28702 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC20.19■□□□□ 0.82
RXRBP28702 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RXRBP28702 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC20.19■□□□□ 0.82
RXRBP28702 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RXRBP28702 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RXRBP28702 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
RXRBP28702 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RXRBP28702 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RXRBP28702 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RXRBP28702 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RXRBP28702 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RXRBP28702 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RXRBP28702 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
RXRBP28702 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC20.18■□□□□ 0.82
RXRBP28702 LINC00634-202ENST00000505157 222 ntBASIC20.18■□□□□ 0.82
RXRBP28702 POLD4-208ENST00000532830 904 ntTSL 3 BASIC20.18■□□□□ 0.82
RXRBP28702 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RXRBP28702 MIR4683-201ENST00000579659 81 ntBASIC20.18■□□□□ 0.82
RXRBP28702 MIR4522-201ENST00000584932 87 ntBASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms