Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 MTX1P1-201ENST00000440904 838 ntBASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 RNA5SP423-201ENST00000517127 109 ntBASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 NEU3-202ENST00000526068 431 ntTSL 2 BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 ACTG1P17-201ENST00000558391 1119 ntBASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CSB-PGBD3P0DP91 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 AL138709.1-201ENST00000614840 1693 ntBASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 ME2P1-201ENST00000426028 1970 ntBASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 ELK2AP-201ENST00000392510 1007 ntBASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 AL133267.1-201ENST00000398220 340 ntBASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 SUN1-204ENST00000403868 978 ntTSL 2 BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 HOMER2P2-201ENST00000451621 847 ntBASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CSB-PGBD3P0DP91 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 AC104982.3-201ENST00000581995 514 ntBASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 AC132938.4-201ENST00000623835 848 ntBASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CSB-PGBD3P0DP91 HARS-202ENST00000415192 1401 ntTSL 2 BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 AL138799.1-201ENST00000448213 1675 ntBASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 AKR7A2P1-201ENST00000460134 915 ntBASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 RNA5SP486-201ENST00000515961 83 ntBASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC20.78■□□□□ 0.92
CSB-PGBD3P0DP91 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms