Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP4O75161 UBALD1-205ENST00000590891 2641 ntBASIC21.73■■□□□ 1.07
NPHP4O75161 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP4O75161 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP4O75161 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC21.73■■□□□ 1.07
NPHP4O75161 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP4O75161 RPS9P1-201ENST00000419943 583 ntBASIC21.73■■□□□ 1.07
NPHP4O75161 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC21.73■■□□□ 1.07
NPHP4O75161 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC21.73■■□□□ 1.07
NPHP4O75161 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC21.73■■□□□ 1.07
NPHP4O75161 AC009779.1-201ENST00000551138 283 ntBASIC21.73■■□□□ 1.07
NPHP4O75161 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC21.73■■□□□ 1.07
NPHP4O75161 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC21.73■■□□□ 1.07
NPHP4O75161 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP4O75161 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC21.73■■□□□ 1.07
NPHP4O75161 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC21.73■■□□□ 1.07
NPHP4O75161 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC21.73■■□□□ 1.07
NPHP4O75161 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP4O75161 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP4O75161 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP4O75161 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC21.73■■□□□ 1.07
NPHP4O75161 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP4O75161 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC21.73■■□□□ 1.07
NPHP4O75161 AC068880.1-201ENST00000507289 2297 ntBASIC21.73■■□□□ 1.07
NPHP4O75161 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP4O75161 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP4O75161 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
NPHP4O75161 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.73■■□□□ 1.07
NPHP4O75161 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP4O75161 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.73■■□□□ 1.07
NPHP4O75161 AL133373.2-201ENST00000623187 2828 ntBASIC21.73■■□□□ 1.07
NPHP4O75161 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC21.72■■□□□ 1.07
NPHP4O75161 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
NPHP4O75161 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC21.72■■□□□ 1.07
NPHP4O75161 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC21.72■■□□□ 1.07
NPHP4O75161 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC21.72■■□□□ 1.07
NPHP4O75161 EHF-205ENST00000527935 557 ntTSL 2 BASIC21.72■■□□□ 1.07
NPHP4O75161 AP002803.1-201ENST00000528836 498 ntBASIC21.72■■□□□ 1.07
NPHP4O75161 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC21.72■■□□□ 1.07
NPHP4O75161 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC21.72■■□□□ 1.07
NPHP4O75161 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC21.72■■□□□ 1.07
NPHP4O75161 AC007881.3-201ENST00000608897 607 ntBASIC21.72■■□□□ 1.07
NPHP4O75161 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC21.72■■□□□ 1.07
NPHP4O75161 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
NPHP4O75161 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
NPHP4O75161 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC21.72■■□□□ 1.07
NPHP4O75161 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC21.72■■□□□ 1.07
NPHP4O75161 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 RPL7P35-201ENST00000446943 740 ntBASIC21.72■■□□□ 1.07
NPHP4O75161 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC21.72■■□□□ 1.07
NPHP4O75161 HNRNPA1P36-201ENST00000521313 955 ntBASIC21.72■■□□□ 1.07
NPHP4O75161 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC21.72■■□□□ 1.07
NPHP4O75161 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC21.72■■□□□ 1.07
NPHP4O75161 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC21.72■■□□□ 1.07
NPHP4O75161 AL603764.1-201ENST00000636452 321 ntBASIC21.72■■□□□ 1.07
NPHP4O75161 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP4O75161 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
NPHP4O75161 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP4O75161 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
NPHP4O75161 AC022188.1-201ENST00000620960 1664 ntBASIC21.71■■□□□ 1.07
NPHP4O75161 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP4O75161 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
NPHP4O75161 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP4O75161 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC21.71■■□□□ 1.07
NPHP4O75161 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP4O75161 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP4O75161 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPHP4O75161 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
NPHP4O75161 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC21.71■■□□□ 1.07
NPHP4O75161 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC21.71■■□□□ 1.07
NPHP4O75161 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC21.71■■□□□ 1.07
NPHP4O75161 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC21.71■■□□□ 1.07
NPHP4O75161 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC21.71■■□□□ 1.07
NPHP4O75161 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC21.71■■□□□ 1.07
NPHP4O75161 FOS-204ENST00000554617 796 ntTSL 2 BASIC21.71■■□□□ 1.07
NPHP4O75161 RBM8B-201ENST00000555532 525 ntBASIC21.71■■□□□ 1.07
NPHP4O75161 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC21.71■■□□□ 1.07
NPHP4O75161 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC21.71■■□□□ 1.07
NPHP4O75161 MIR4683-201ENST00000579659 81 ntBASIC21.71■■□□□ 1.07
NPHP4O75161 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC21.71■■□□□ 1.07
NPHP4O75161 AL358472.3-201ENST00000608147 415 ntBASIC21.71■■□□□ 1.07
NPHP4O75161 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC21.71■■□□□ 1.07
NPHP4O75161 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
NPHP4O75161 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP4O75161 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC21.7■■□□□ 1.06
NPHP4O75161 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC21.7■■□□□ 1.06
NPHP4O75161 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPHP4O75161 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms