Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.11□□□□□ -0.15
SGCEO43556 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.11□□□□□ -0.15
SGCEO43556 KRT18P32-201ENST00000424695 1287 ntBASIC14.11□□□□□ -0.15
SGCEO43556 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.11□□□□□ -0.15
SGCEO43556 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.11□□□□□ -0.15
SGCEO43556 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.11□□□□□ -0.15
SGCEO43556 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.11□□□□□ -0.15
SGCEO43556 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.11□□□□□ -0.15
SGCEO43556 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.11□□□□□ -0.15
SGCEO43556 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.11□□□□□ -0.15
SGCEO43556 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.11□□□□□ -0.15
SGCEO43556 CALM1-205ENST00000553542 877 ntTSL 5 BASIC14.11□□□□□ -0.15
SGCEO43556 AC243562.2-201ENST00000561247 970 ntBASIC14.11□□□□□ -0.15
SGCEO43556 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 AC084121.4-201ENST00000641598 221 ntBASIC14.11□□□□□ -0.15
SGCEO43556 AF228730.8-201ENST00000642140 221 ntBASIC14.11□□□□□ -0.15
SGCEO43556 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.11□□□□□ -0.15
SGCEO43556 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.11□□□□□ -0.15
SGCEO43556 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.11□□□□□ -0.15
SGCEO43556 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.11□□□□□ -0.15
SGCEO43556 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.1□□□□□ -0.15
SGCEO43556 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.1□□□□□ -0.15
SGCEO43556 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.1□□□□□ -0.15
SGCEO43556 AC011477.6-201ENST00000604980 1927 ntBASIC14.1□□□□□ -0.15
SGCEO43556 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.1□□□□□ -0.15
SGCEO43556 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.1□□□□□ -0.15
SGCEO43556 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.1□□□□□ -0.15
SGCEO43556 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.1□□□□□ -0.15
SGCEO43556 RPP21-221ENST00000428040 594 ntTSL 2 BASIC14.1□□□□□ -0.15
SGCEO43556 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.1□□□□□ -0.15
SGCEO43556 AP000344.2-201ENST00000512987 629 ntBASIC14.1□□□□□ -0.15
SGCEO43556 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC14.1□□□□□ -0.15
SGCEO43556 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.1□□□□□ -0.15
SGCEO43556 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.1□□□□□ -0.15
SGCEO43556 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.1□□□□□ -0.15
SGCEO43556 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
SGCEO43556 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.1□□□□□ -0.15
SGCEO43556 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SGCEO43556 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.1□□□□□ -0.15
SGCEO43556 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SGCEO43556 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.1□□□□□ -0.15
SGCEO43556 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.1□□□□□ -0.15
SGCEO43556 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
SGCEO43556 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
SGCEO43556 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.09□□□□□ -0.15
SGCEO43556 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SGCEO43556 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
SGCEO43556 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SGCEO43556 AC134407.2-201ENST00000625089 1978 ntBASIC14.09□□□□□ -0.15
SGCEO43556 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.09□□□□□ -0.15
SGCEO43556 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SGCEO43556 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.09□□□□□ -0.15
SGCEO43556 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
SGCEO43556 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.09□□□□□ -0.15
SGCEO43556 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SGCEO43556 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SGCEO43556 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SGCEO43556 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SGCEO43556 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
SGCEO43556 AC004461.1-201ENST00000412461 403 ntBASIC14.09□□□□□ -0.15
SGCEO43556 AC211486.1-202ENST00000416371 468 ntBASIC14.09□□□□□ -0.15
SGCEO43556 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.09□□□□□ -0.15
SGCEO43556 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SGCEO43556 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.09□□□□□ -0.15
SGCEO43556 AC211476.1-201ENST00000503899 468 ntBASIC14.09□□□□□ -0.15
SGCEO43556 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.09□□□□□ -0.15
SGCEO43556 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.09□□□□□ -0.15
SGCEO43556 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.09□□□□□ -0.15
SGCEO43556 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SGCEO43556 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC14.09□□□□□ -0.15
SGCEO43556 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.09□□□□□ -0.15
SGCEO43556 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.09□□□□□ -0.15
SGCEO43556 AC004835.2-201ENST00000603762 682 ntBASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms