Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.93■□□□□ 0.78
NPHP1O15259 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 AC011676.5-201ENST00000624864 2660 ntBASIC19.93■□□□□ 0.78
NPHP1O15259 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC19.93■□□□□ 0.78
NPHP1O15259 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
NPHP1O15259 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
NPHP1O15259 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
NPHP1O15259 AC105020.1-201ENST00000435356 2205 ntBASIC19.92■□□□□ 0.78
NPHP1O15259 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC19.92■□□□□ 0.78
NPHP1O15259 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
NPHP1O15259 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC19.92■□□□□ 0.78
NPHP1O15259 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC19.92■□□□□ 0.78
NPHP1O15259 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC19.92■□□□□ 0.78
NPHP1O15259 FO681548.1-201ENST00000455617 1132 ntBASIC19.92■□□□□ 0.78
NPHP1O15259 PFN1P12-201ENST00000455938 534 ntBASIC19.92■□□□□ 0.78
NPHP1O15259 AC007551.1-201ENST00000457394 519 ntBASIC19.92■□□□□ 0.78
NPHP1O15259 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC19.92■□□□□ 0.78
NPHP1O15259 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 RNA5SP412-201ENST00000516234 123 ntBASIC19.92■□□□□ 0.78
NPHP1O15259 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC19.92■□□□□ 0.78
NPHP1O15259 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC19.92■□□□□ 0.78
NPHP1O15259 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC19.92■□□□□ 0.78
NPHP1O15259 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC19.92■□□□□ 0.78
NPHP1O15259 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC19.92■□□□□ 0.78
NPHP1O15259 AC010328.2-201ENST00000597698 1111 ntBASIC19.92■□□□□ 0.78
NPHP1O15259 AL049840.4-201ENST00000602422 811 ntBASIC19.92■□□□□ 0.78
NPHP1O15259 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
NPHP1O15259 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.92■□□□□ 0.78
NPHP1O15259 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.92■□□□□ 0.78
NPHP1O15259 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP1O15259 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
NPHP1O15259 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.91■□□□□ 0.78
NPHP1O15259 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
NPHP1O15259 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
NPHP1O15259 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC19.91■□□□□ 0.78
NPHP1O15259 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 GZMB-202ENST00000382540 816 ntTSL 5 BASIC19.91■□□□□ 0.78
NPHP1O15259 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC19.91■□□□□ 0.78
NPHP1O15259 YBX1P6-201ENST00000442962 1002 ntBASIC19.91■□□□□ 0.78
NPHP1O15259 AC245100.5-201ENST00000452108 331 ntBASIC19.91■□□□□ 0.78
NPHP1O15259 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC19.91■□□□□ 0.78
NPHP1O15259 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC19.91■□□□□ 0.78
NPHP1O15259 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC19.91■□□□□ 0.78
NPHP1O15259 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NPHP1O15259 AP001889.1-201ENST00000525414 633 ntBASIC19.91■□□□□ 0.78
NPHP1O15259 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC19.91■□□□□ 0.78
NPHP1O15259 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC19.91■□□□□ 0.78
NPHP1O15259 AC009486.1-201ENST00000569860 813 ntBASIC19.91■□□□□ 0.78
NPHP1O15259 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC19.91■□□□□ 0.78
NPHP1O15259 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC19.91■□□□□ 0.78
NPHP1O15259 AC068587.10-201ENST00000641210 219 ntBASIC19.91■□□□□ 0.78
NPHP1O15259 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
NPHP1O15259 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
NPHP1O15259 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP1O15259 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
NPHP1O15259 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms