Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX1O00570 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX1O00570 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX1O00570 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.6■□□□□ 0.25
SOX1O00570 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.59■□□□□ 0.25
SOX1O00570 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
SOX1O00570 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 AL357373.1-201ENST00000394974 322 ntBASIC16.59■□□□□ 0.25
SOX1O00570 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC16.59■□□□□ 0.25
SOX1O00570 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
SOX1O00570 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 AL031713.1-201ENST00000564813 661 ntBASIC16.59■□□□□ 0.25
SOX1O00570 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC16.59■□□□□ 0.25
SOX1O00570 RPL17P45-201ENST00000586289 509 ntBASIC16.59■□□□□ 0.25
SOX1O00570 OR10B1P-201ENST00000601666 907 ntBASIC16.59■□□□□ 0.25
SOX1O00570 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC16.59■□□□□ 0.25
SOX1O00570 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
SOX1O00570 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
SOX1O00570 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC16.59■□□□□ 0.25
SOX1O00570 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.59■□□□□ 0.25
SOX1O00570 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.59■□□□□ 0.25
SOX1O00570 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SOX1O00570 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.59■□□□□ 0.25
SOX1O00570 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.59■□□□□ 0.25
SOX1O00570 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX1O00570 AC148477.4-201ENST00000613430 1793 ntBASIC16.59■□□□□ 0.25
SOX1O00570 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.59■□□□□ 0.25
SOX1O00570 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SOX1O00570 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SOX1O00570 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SOX1O00570 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
SOX1O00570 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
SOX1O00570 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
SOX1O00570 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SOX1O00570 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.58■□□□□ 0.25
SOX1O00570 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.58■□□□□ 0.24
SOX1O00570 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 HNRNPA1P41-201ENST00000397777 928 ntBASIC16.58■□□□□ 0.24
SOX1O00570 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.58■□□□□ 0.24
SOX1O00570 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC16.58■□□□□ 0.24
SOX1O00570 CHMP1AP1-201ENST00000445563 662 ntBASIC16.58■□□□□ 0.24
SOX1O00570 AC018463.1-201ENST00000456674 917 ntBASIC16.58■□□□□ 0.24
SOX1O00570 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.58■□□□□ 0.24
SOX1O00570 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 AC090857.1-201ENST00000527400 390 ntBASIC16.58■□□□□ 0.24
SOX1O00570 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 AC027139.1-201ENST00000565286 951 ntBASIC16.58■□□□□ 0.24
SOX1O00570 ZACNP1-201ENST00000612259 710 ntBASIC16.58■□□□□ 0.24
SOX1O00570 MME-218ENST00000625667 363 ntTSL 5 BASIC16.58■□□□□ 0.24
SOX1O00570 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.58■□□□□ 0.24
SOX1O00570 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SOX1O00570 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC16.58■□□□□ 0.24
SOX1O00570 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 BICD1-207ENST00000551848 1962 ntBASIC16.58■□□□□ 0.24
SOX1O00570 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SOX1O00570 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.58■□□□□ 0.24
SOX1O00570 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX1O00570 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SOX1O00570 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SOX1O00570 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
SOX1O00570 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX1O00570 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX1O00570 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.57■□□□□ 0.24
SOX1O00570 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX1O00570 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SOX1O00570 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX1O00570 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SOX1O00570 LETM1P2-201ENST00000597330 2178 ntBASIC16.57■□□□□ 0.24
SOX1O00570 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX1O00570 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX1O00570 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX1O00570 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
SOX1O00570 AC020916.1-201ENST00000587762 1774 ntBASIC16.57■□□□□ 0.24
SOX1O00570 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX1O00570 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.57■□□□□ 0.24
SOX1O00570 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX1O00570 ANKRD30BP2-201ENST00000435744 1610 ntBASIC16.57■□□□□ 0.24
SOX1O00570 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms