Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
COL12A1Q99715 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.56□□□□□ -0.24
COL12A1Q99715 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
COL12A1Q99715 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 KRT18P25-201ENST00000508931 1278 ntBASIC13.56□□□□□ -0.24
COL12A1Q99715 TMCO5B-205ENST00000530020 894 ntBASIC13.56□□□□□ -0.24
COL12A1Q99715 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC13.56□□□□□ -0.24
COL12A1Q99715 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 AC242376.1-201ENST00000559033 726 ntBASIC13.56□□□□□ -0.24
COL12A1Q99715 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.56□□□□□ -0.24
COL12A1Q99715 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC13.56□□□□□ -0.24
COL12A1Q99715 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC13.56□□□□□ -0.24
COL12A1Q99715 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
COL12A1Q99715 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC13.55□□□□□ -0.24
COL12A1Q99715 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.55□□□□□ -0.24
COL12A1Q99715 MIR4754-201ENST00000582477 89 ntBASIC13.55□□□□□ -0.24
COL12A1Q99715 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC13.55□□□□□ -0.24
COL12A1Q99715 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC13.55□□□□□ -0.24
COL12A1Q99715 AL645728.2-202ENST00000641679 227 ntBASIC13.55□□□□□ -0.24
COL12A1Q99715 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC13.55□□□□□ -0.24
COL12A1Q99715 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC13.55□□□□□ -0.24
COL12A1Q99715 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC13.55□□□□□ -0.24
COL12A1Q99715 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
COL12A1Q99715 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC13.55□□□□□ -0.24
COL12A1Q99715 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
COL12A1Q99715 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.55□□□□□ -0.24
COL12A1Q99715 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 RPL7P35-201ENST00000446943 740 ntBASIC13.55□□□□□ -0.24
COL12A1Q99715 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC13.55□□□□□ -0.24
COL12A1Q99715 GAPDHP40-201ENST00000505218 1006 ntBASIC13.55□□□□□ -0.24
COL12A1Q99715 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.55□□□□□ -0.24
COL12A1Q99715 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.55□□□□□ -0.24
COL12A1Q99715 AC244157.2-201ENST00000616239 1006 ntBASIC13.55□□□□□ -0.24
COL12A1Q99715 AC006453.1-201ENST00000636037 1257 ntBASIC13.55□□□□□ -0.24
COL12A1Q99715 AC068880.1-201ENST00000507289 2297 ntBASIC13.55□□□□□ -0.24
COL12A1Q99715 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 AC060834.1-201ENST00000443027 2032 ntBASIC13.55□□□□□ -0.24
COL12A1Q99715 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC13.55□□□□□ -0.24
COL12A1Q99715 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
COL12A1Q99715 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 TPM3P8-201ENST00000330554 643 ntBASIC13.55□□□□□ -0.24
COL12A1Q99715 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
COL12A1Q99715 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC13.55□□□□□ -0.24
COL12A1Q99715 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 AC012044.1-201ENST00000603431 297 ntBASIC13.55□□□□□ -0.24
COL12A1Q99715 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL12A1Q99715 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.55□□□□□ -0.24
COL12A1Q99715 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
COL12A1Q99715 AL691432.1-201ENST00000596308 1422 ntBASIC13.54□□□□□ -0.24
COL12A1Q99715 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC13.54□□□□□ -0.24
COL12A1Q99715 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC13.54□□□□□ -0.24
COL12A1Q99715 AL359258.3-201ENST00000622910 2331 ntBASIC13.54□□□□□ -0.24
COL12A1Q99715 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC13.54□□□□□ -0.24
COL12A1Q99715 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC13.54□□□□□ -0.24
COL12A1Q99715 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.54□□□□□ -0.24
COL12A1Q99715 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC13.54□□□□□ -0.24
COL12A1Q99715 AC021723.1-201ENST00000486306 515 ntBASIC13.54□□□□□ -0.24
COL12A1Q99715 NAT9-211ENST00000580632 799 ntTSL 3 BASIC13.54□□□□□ -0.24
COL12A1Q99715 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.54□□□□□ -0.24
COL12A1Q99715 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.54□□□□□ -0.24
COL12A1Q99715 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.54□□□□□ -0.24
COL12A1Q99715 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 BANP-227ENST00000626016 2144 ntTSL 2 BASIC13.54□□□□□ -0.24
COL12A1Q99715 KRT8P4-201ENST00000509735 1454 ntBASIC13.54□□□□□ -0.24
COL12A1Q99715 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.54□□□□□ -0.24
COL12A1Q99715 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 AC136759.1-202ENST00000530858 2194 ntBASIC13.54□□□□□ -0.24
COL12A1Q99715 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC13.54□□□□□ -0.24
COL12A1Q99715 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms