Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 AC027369.6-201ENST00000525520 931 ntBASIC12.26□□□□□ -0.45
CCDC140Q96MF4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 PPT1-215ENST00000641471 2368 ntBASIC12.26□□□□□ -0.45
CCDC140Q96MF4 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 AMT-233ENST00000636522 1620 ntTSL 2 BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CCDC140Q96MF4 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AC073347.1-201ENST00000421633 2643 ntBASIC12.25□□□□□ -0.45
CCDC140Q96MF4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 MIR943-201ENST00000401286 94 ntBASIC12.25□□□□□ -0.45
CCDC140Q96MF4 HLA-DRB6-201ENST00000411500 1235 ntBASIC12.25□□□□□ -0.45
CCDC140Q96MF4 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AC092183.1-201ENST00000469884 875 ntBASIC12.25□□□□□ -0.45
CCDC140Q96MF4 RN7SL618P-201ENST00000477850 296 ntBASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 LY6E-204ENST00000519546 971 ntTSL 2 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AC010336.2-201ENST00000564226 506 ntBASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 RN7SL121P-201ENST00000584223 273 ntBASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AC025048.3-201ENST00000590609 569 ntBASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AC005702.4-201ENST00000618393 416 ntBASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 AC087481.3-201ENST00000602886 1894 ntBASIC12.25□□□□□ -0.45
CCDC140Q96MF4 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 FES-204ENST00000414248 2327 ntTSL 2 BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CCDC140Q96MF4 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms