Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.55■□□□□ 0.4
HPS3Q969F9 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HPS3Q969F9 AC051619.7-201ENST00000568314 623 ntBASIC17.55■□□□□ 0.4
HPS3Q969F9 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.55■□□□□ 0.4
HPS3Q969F9 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.55■□□□□ 0.4
HPS3Q969F9 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.55■□□□□ 0.4
HPS3Q969F9 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.55■□□□□ 0.4
HPS3Q969F9 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.55■□□□□ 0.4
HPS3Q969F9 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS3Q969F9 CETN4P-206ENST00000642099 2168 ntBASIC17.55■□□□□ 0.4
HPS3Q969F9 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
HPS3Q969F9 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HPS3Q969F9 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HPS3Q969F9 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.54■□□□□ 0.4
HPS3Q969F9 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HPS3Q969F9 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
HPS3Q969F9 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.54■□□□□ 0.4
HPS3Q969F9 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.54■□□□□ 0.4
HPS3Q969F9 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.54■□□□□ 0.4
HPS3Q969F9 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 AC074338.1-201ENST00000416825 156 ntBASIC17.54■□□□□ 0.4
HPS3Q969F9 AC136604.1-201ENST00000418535 575 ntBASIC17.54■□□□□ 0.4
HPS3Q969F9 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.54■□□□□ 0.4
HPS3Q969F9 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
HPS3Q969F9 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.54■□□□□ 0.4
HPS3Q969F9 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.54■□□□□ 0.4
HPS3Q969F9 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.54■□□□□ 0.4
HPS3Q969F9 AC025678.2-201ENST00000562061 970 ntBASIC17.54■□□□□ 0.4
HPS3Q969F9 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.54■□□□□ 0.4
HPS3Q969F9 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HPS3Q969F9 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.54■□□□□ 0.4
HPS3Q969F9 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HPS3Q969F9 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HPS3Q969F9 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS3Q969F9 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.53■□□□□ 0.4
HPS3Q969F9 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.53■□□□□ 0.4
HPS3Q969F9 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.53■□□□□ 0.4
HPS3Q969F9 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.53■□□□□ 0.4
HPS3Q969F9 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.53■□□□□ 0.4
HPS3Q969F9 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.53■□□□□ 0.4
HPS3Q969F9 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.53■□□□□ 0.4
HPS3Q969F9 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 AC138035.3-201ENST00000622706 2791 ntBASIC17.53■□□□□ 0.4
HPS3Q969F9 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HPS3Q969F9 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 AC022532.1-201ENST00000624563 1728 ntBASIC17.53■□□□□ 0.4
HPS3Q969F9 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HPS3Q969F9 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.53■□□□□ 0.4
HPS3Q969F9 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 AC092580.3-201ENST00000430932 139 ntBASIC17.53■□□□□ 0.4
HPS3Q969F9 TARDBPP1-201ENST00000442013 1203 ntBASIC17.53■□□□□ 0.4
HPS3Q969F9 CNN2P2-201ENST00000443536 909 ntBASIC17.53■□□□□ 0.4
HPS3Q969F9 CNN2P3-201ENST00000450201 906 ntBASIC17.53■□□□□ 0.4
HPS3Q969F9 KLF2P3-201ENST00000451977 1087 ntBASIC17.53■□□□□ 0.4
HPS3Q969F9 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.53■□□□□ 0.4
HPS3Q969F9 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.53■□□□□ 0.4
HPS3Q969F9 DUX4L27-201ENST00000554796 1261 ntBASIC17.53■□□□□ 0.4
HPS3Q969F9 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.53■□□□□ 0.4
HPS3Q969F9 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.53■□□□□ 0.4
HPS3Q969F9 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.53■□□□□ 0.4
HPS3Q969F9 TEX28P1-201ENST00000613479 1221 ntBASIC17.53■□□□□ 0.4
HPS3Q969F9 TEX28P2-201ENST00000617764 1221 ntBASIC17.53■□□□□ 0.4
HPS3Q969F9 AL136317.3-201ENST00000618497 906 ntBASIC17.53■□□□□ 0.4
HPS3Q969F9 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
HPS3Q969F9 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.53■□□□□ 0.4
HPS3Q969F9 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
HPS3Q969F9 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HPS3Q969F9 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HPS3Q969F9 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.53■□□□□ 0.4
HPS3Q969F9 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HPS3Q969F9 AC112693.3-201ENST00000624819 1983 ntBASIC17.53■□□□□ 0.4
HPS3Q969F9 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms