Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NKX2-3Q8TAU0 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX2-3Q8TAU0 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX2-3Q8TAU0 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC18.64■□□□□ 0.57
NKX2-3Q8TAU0 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX2-3Q8TAU0 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 MIR6869-201ENST00000619434 62 ntBASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 RETN-203ENST00000629642 400 ntTSL 5 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 CLK3P2-201ENST00000427566 1453 ntBASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-3Q8TAU0 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 AC092506.1-202ENST00000401022 528 ntBASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 CD74-212ENST00000524315 584 ntTSL 5 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 AC103810.3-201ENST00000583567 96 ntBASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 AC015936.2-201ENST00000593177 259 ntBASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 GPR182-203ENST00000622922 591 ntBASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 HCG11-201ENST00000411553 5696 ntBASIC18.62■□□□□ 0.57
NKX2-3Q8TAU0 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms