Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 PFN2-202ENST00000423691 911 ntTSL 2 BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 CEP164P1-201ENST00000455142 418 ntBASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 RN7SL48P-201ENST00000579283 293 ntBASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 PPY2P-201ENST00000582808 702 ntBASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 AC087045.2-201ENST00000606279 1003 ntBASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 AL136301.1-201ENST00000615830 422 ntBASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 AL031731.1-201ENST00000642131 2094 ntBASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 AL121723.1-201ENST00000445194 1519 ntBASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 AL157792.1-201ENST00000488281 530 ntBASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 AC005730.2-201ENST00000564549 1184 ntBASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 RNF146-211ENST00000609447 607 ntTSL 4 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 AL805961.1-201ENST00000642026 753 ntBASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMC1BQ8NDV3 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 AL353637.1-201ENST00000451571 732 ntBASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 AC010234.1-201ENST00000494599 870 ntBASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 IGLV3-15-201ENST00000518356 244 ntBASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 LINC02012-201ENST00000608206 1725 ntBASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMC1BQ8NDV3 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms