Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.1■□□□□ 0.33
KRT39Q6A163 AC025048.3-201ENST00000590609 569 ntBASIC17.1■□□□□ 0.33
KRT39Q6A163 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.1■□□□□ 0.33
KRT39Q6A163 AC005702.4-201ENST00000618393 416 ntBASIC17.1■□□□□ 0.33
KRT39Q6A163 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
KRT39Q6A163 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
KRT39Q6A163 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.1■□□□□ 0.33
KRT39Q6A163 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.1■□□□□ 0.33
KRT39Q6A163 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
KRT39Q6A163 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.1■□□□□ 0.33
KRT39Q6A163 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.1■□□□□ 0.33
KRT39Q6A163 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
KRT39Q6A163 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.1■□□□□ 0.33
KRT39Q6A163 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.1■□□□□ 0.33
KRT39Q6A163 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.1■□□□□ 0.33
KRT39Q6A163 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
KRT39Q6A163 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.1■□□□□ 0.33
KRT39Q6A163 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.09■□□□□ 0.33
KRT39Q6A163 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.09■□□□□ 0.33
KRT39Q6A163 SSR4P1-203ENST00000599569 2260 ntBASIC17.09■□□□□ 0.33
KRT39Q6A163 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
KRT39Q6A163 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
KRT39Q6A163 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
KRT39Q6A163 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.09■□□□□ 0.33
KRT39Q6A163 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT39Q6A163 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT39Q6A163 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT39Q6A163 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.09■□□□□ 0.33
KRT39Q6A163 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.09■□□□□ 0.33
KRT39Q6A163 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.09■□□□□ 0.33
KRT39Q6A163 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.09■□□□□ 0.33
KRT39Q6A163 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC17.09■□□□□ 0.33
KRT39Q6A163 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.09■□□□□ 0.33
KRT39Q6A163 AC010336.2-201ENST00000564226 506 ntBASIC17.09■□□□□ 0.33
KRT39Q6A163 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.09■□□□□ 0.33
KRT39Q6A163 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.09■□□□□ 0.33
KRT39Q6A163 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.09■□□□□ 0.33
KRT39Q6A163 AC087499.5-201ENST00000452760 1342 ntBASIC17.09■□□□□ 0.33
KRT39Q6A163 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
KRT39Q6A163 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.09■□□□□ 0.33
KRT39Q6A163 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.09■□□□□ 0.33
KRT39Q6A163 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
KRT39Q6A163 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT39Q6A163 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.09■□□□□ 0.33
KRT39Q6A163 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
KRT39Q6A163 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT39Q6A163 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT39Q6A163 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
KRT39Q6A163 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
KRT39Q6A163 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT39Q6A163 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT39Q6A163 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
KRT39Q6A163 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT39Q6A163 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT39Q6A163 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
KRT39Q6A163 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT39Q6A163 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT39Q6A163 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
KRT39Q6A163 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.08■□□□□ 0.33
KRT39Q6A163 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
KRT39Q6A163 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
KRT39Q6A163 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
KRT39Q6A163 AC136621.1-201ENST00000624017 2304 ntBASIC17.08■□□□□ 0.33
KRT39Q6A163 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT39Q6A163 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.08■□□□□ 0.33
KRT39Q6A163 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT39Q6A163 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
KRT39Q6A163 AC087481.3-201ENST00000602886 1894 ntBASIC17.08■□□□□ 0.33
KRT39Q6A163 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT39Q6A163 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.08■□□□□ 0.32
KRT39Q6A163 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT39Q6A163 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
KRT39Q6A163 AC100757.3-201ENST00000622361 1406 ntBASIC17.08■□□□□ 0.32
KRT39Q6A163 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
KRT39Q6A163 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT39Q6A163 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.08■□□□□ 0.32
KRT39Q6A163 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
KRT39Q6A163 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT39Q6A163 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.08■□□□□ 0.32
KRT39Q6A163 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
KRT39Q6A163 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.08■□□□□ 0.32
KRT39Q6A163 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT39Q6A163 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
KRT39Q6A163 AL590560.3-201ENST00000623350 461 ntBASIC17.08■□□□□ 0.32
KRT39Q6A163 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT39Q6A163 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
KRT39Q6A163 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.08■□□□□ 0.32
KRT39Q6A163 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms