Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 AC008267.1-201ENST00000474858 1069 ntBASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 RN7SL720P-201ENST00000488178 304 ntBASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 AF254983.2-201ENST00000612331 135 ntBASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 AL133499.1-201ENST00000596207 608 ntBASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 AC073413.1-201ENST00000603927 732 ntBASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 IQSEC3P1-201ENST00000538799 536 ntBASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 GPX4-206ENST00000588919 803 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC88AQ3V6T2 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 AC124067.4-201ENST00000519691 2379 ntBASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 GHSR-202ENST00000427970 912 ntBASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 AC015818.8-201ENST00000587907 1519 ntBASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 PCDHA14-201ENST00000506751 2298 ntBASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CCDC88AQ3V6T2 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 AC099398.1-201ENST00000567919 2776 ntBASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 RN7SL181P-201ENST00000462921 277 ntBASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 RN7SL11P-201ENST00000471305 293 ntBASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms