Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
RFX3P48380 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
RFX3P48380 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.99□□□□□ -0.01
RFX3P48380 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.99□□□□□ -0.01
RFX3P48380 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.99□□□□□ -0.01
RFX3P48380 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC14.99□□□□□ -0.01
RFX3P48380 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.99□□□□□ -0.01
RFX3P48380 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
RFX3P48380 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.99□□□□□ -0.01
RFX3P48380 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 AC004967.1-201ENST00000453589 447 ntBASIC14.99□□□□□ -0.01
RFX3P48380 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC14.99□□□□□ -0.01
RFX3P48380 AP000344.2-201ENST00000512987 629 ntBASIC14.99□□□□□ -0.01
RFX3P48380 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.99□□□□□ -0.01
RFX3P48380 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC14.99□□□□□ -0.01
RFX3P48380 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 LINC01225-203ENST00000563550 1244 ntBASIC14.99□□□□□ -0.01
RFX3P48380 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.99□□□□□ -0.01
RFX3P48380 MIR4321-201ENST00000592276 80 ntBASIC14.99□□□□□ -0.01
RFX3P48380 AL691403.2-201ENST00000618460 490 ntBASIC14.99□□□□□ -0.01
RFX3P48380 AC023511.2-201ENST00000618803 211 ntBASIC14.99□□□□□ -0.01
RFX3P48380 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.99□□□□□ -0.01
RFX3P48380 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.99□□□□□ -0.01
RFX3P48380 AC092384.3-202ENST00000564646 2873 ntBASIC14.99□□□□□ -0.01
RFX3P48380 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.99□□□□□ -0.01
RFX3P48380 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.99□□□□□ -0.01
RFX3P48380 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.99□□□□□ -0.01
RFX3P48380 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.99□□□□□ -0.01
RFX3P48380 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
RFX3P48380 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
RFX3P48380 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.98□□□□□ -0.01
RFX3P48380 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.98□□□□□ -0.01
RFX3P48380 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.98□□□□□ -0.01
RFX3P48380 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.98□□□□□ -0.01
RFX3P48380 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.98□□□□□ -0.01
RFX3P48380 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.98□□□□□ -0.01
RFX3P48380 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 HLA-H-201ENST00000383620 1096 ntBASIC14.98□□□□□ -0.01
RFX3P48380 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC14.98□□□□□ -0.01
RFX3P48380 AL627223.1-201ENST00000416693 442 ntBASIC14.98□□□□□ -0.01
RFX3P48380 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.98□□□□□ -0.01
RFX3P48380 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.98□□□□□ -0.01
RFX3P48380 CNN2P11-201ENST00000429351 262 ntBASIC14.98□□□□□ -0.01
RFX3P48380 RBPMS2P1-201ENST00000437762 623 ntBASIC14.98□□□□□ -0.01
RFX3P48380 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.98□□□□□ -0.01
RFX3P48380 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.98□□□□□ -0.01
RFX3P48380 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
RFX3P48380 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
RFX3P48380 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.98□□□□□ -0.01
RFX3P48380 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
RFX3P48380 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
RFX3P48380 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.98□□□□□ -0.01
RFX3P48380 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.98□□□□□ -0.01
RFX3P48380 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.98□□□□□ -0.01
RFX3P48380 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
RFX3P48380 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.98□□□□□ -0.01
RFX3P48380 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.98□□□□□ -0.01
RFX3P48380 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.98□□□□□ -0.01
RFX3P48380 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
RFX3P48380 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.98□□□□□ -0.01
RFX3P48380 OR2I1P-210ENST00000642037 4691 ntBASIC14.98□□□□□ -0.01
RFX3P48380 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.97□□□□□ -0.01
RFX3P48380 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.97□□□□□ -0.01
RFX3P48380 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms