Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC19.47■□□□□ 0.71
COL5A3P25940 PCBP2-OT1-201ENST00000634357 590 ntBASIC19.47■□□□□ 0.71
COL5A3P25940 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
COL5A3P25940 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A3P25940 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
COL5A3P25940 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A3P25940 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A3P25940 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A3P25940 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A3P25940 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A3P25940 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A3P25940 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
COL5A3P25940 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A3P25940 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC19.46■□□□□ 0.71
COL5A3P25940 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A3P25940 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC19.46■□□□□ 0.71
COL5A3P25940 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A3P25940 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC19.46■□□□□ 0.71
COL5A3P25940 AL358472.3-201ENST00000608147 415 ntBASIC19.46■□□□□ 0.71
COL5A3P25940 U62317.3-201ENST00000608319 855 ntBASIC19.46■□□□□ 0.71
COL5A3P25940 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC19.46■□□□□ 0.71
COL5A3P25940 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A3P25940 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
COL5A3P25940 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC19.46■□□□□ 0.71
COL5A3P25940 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.46■□□□□ 0.71
COL5A3P25940 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A3P25940 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A3P25940 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A3P25940 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A3P25940 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A3P25940 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL5A3P25940 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC19.45■□□□□ 0.7
COL5A3P25940 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC19.45■□□□□ 0.7
COL5A3P25940 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC19.45■□□□□ 0.7
COL5A3P25940 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC19.45■□□□□ 0.7
COL5A3P25940 SYT17-208ENST00000568433 812 ntTSL 3 BASIC19.45■□□□□ 0.7
COL5A3P25940 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC19.45■□□□□ 0.7
COL5A3P25940 BNIP3P13-201ENST00000599968 566 ntBASIC19.45■□□□□ 0.7
COL5A3P25940 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
COL5A3P25940 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL5A3P25940 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL5A3P25940 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL5A3P25940 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL5A3P25940 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19.45■□□□□ 0.7
COL5A3P25940 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
COL5A3P25940 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
COL5A3P25940 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC19.45■□□□□ 0.7
COL5A3P25940 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.45■□□□□ 0.7
COL5A3P25940 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.45■□□□□ 0.7
COL5A3P25940 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC19.45■□□□□ 0.7
COL5A3P25940 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
COL5A3P25940 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 DPM3-202ENST00000368399 517 ntBASIC19.45■□□□□ 0.7
COL5A3P25940 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
COL5A3P25940 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
COL5A3P25940 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC19.45■□□□□ 0.7
COL5A3P25940 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 AL596276.2-201ENST00000447525 331 ntBASIC19.45■□□□□ 0.7
COL5A3P25940 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC19.45■□□□□ 0.7
COL5A3P25940 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC19.45■□□□□ 0.7
COL5A3P25940 AC009955.4-201ENST00000597192 544 ntBASIC19.45■□□□□ 0.7
COL5A3P25940 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC19.45■□□□□ 0.7
COL5A3P25940 AC068587.8-201ENST00000641239 219 ntBASIC19.45■□□□□ 0.7
COL5A3P25940 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.45■□□□□ 0.7
COL5A3P25940 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL5A3P25940 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.45■□□□□ 0.7
COL5A3P25940 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A3P25940 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A3P25940 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A3P25940 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A3P25940 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC19.44■□□□□ 0.7
COL5A3P25940 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.44■□□□□ 0.7
COL5A3P25940 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A3P25940 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A3P25940 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A3P25940 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A3P25940 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A3P25940 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A3P25940 SLC16A6P1-201ENST00000413214 1059 ntBASIC19.44■□□□□ 0.7
COL5A3P25940 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC19.44■□□□□ 0.7
COL5A3P25940 MSRA-203ENST00000441698 788 ntTSL 2 BASIC19.44■□□□□ 0.7
COL5A3P25940 RNMTL1P1-201ENST00000454103 560 ntBASIC19.44■□□□□ 0.7
COL5A3P25940 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC19.44■□□□□ 0.7
COL5A3P25940 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms