Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCNAP12004 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCNAP12004 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.54■□□□□ 0.08
PCNAP12004 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCNAP12004 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
PCNAP12004 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
PCNAP12004 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.53■□□□□ 0.08
PCNAP12004 TNRC18P2-201ENST00000417666 2714 ntBASIC15.53■□□□□ 0.08
PCNAP12004 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
PCNAP12004 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
PCNAP12004 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PCNAP12004 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.53■□□□□ 0.08
PCNAP12004 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.53■□□□□ 0.08
PCNAP12004 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.53■□□□□ 0.08
PCNAP12004 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.53■□□□□ 0.08
PCNAP12004 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.53■□□□□ 0.08
PCNAP12004 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.53■□□□□ 0.08
PCNAP12004 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.53■□□□□ 0.08
PCNAP12004 AC069335.1-201ENST00000489972 472 ntBASIC15.53■□□□□ 0.08
PCNAP12004 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.53■□□□□ 0.08
PCNAP12004 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.53■□□□□ 0.08
PCNAP12004 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.53■□□□□ 0.08
PCNAP12004 SLC25A39P2-201ENST00000537614 270 ntBASIC15.53■□□□□ 0.08
PCNAP12004 AC092865.5-201ENST00000545435 363 ntBASIC15.53■□□□□ 0.08
PCNAP12004 KRT8P23-201ENST00000560090 1207 ntBASIC15.53■□□□□ 0.08
PCNAP12004 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.53■□□□□ 0.08
PCNAP12004 LINC01225-203ENST00000563550 1244 ntBASIC15.53■□□□□ 0.08
PCNAP12004 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.53■□□□□ 0.08
PCNAP12004 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.53■□□□□ 0.08
PCNAP12004 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.53■□□□□ 0.08
PCNAP12004 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PCNAP12004 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PCNAP12004 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.53■□□□□ 0.08
PCNAP12004 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.53■□□□□ 0.08
PCNAP12004 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.53■□□□□ 0.08
PCNAP12004 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.53■□□□□ 0.08
PCNAP12004 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PCNAP12004 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCNAP12004 AC134407.2-201ENST00000625089 1978 ntBASIC15.53■□□□□ 0.08
PCNAP12004 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.53■□□□□ 0.08
PCNAP12004 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCNAP12004 AL161772.1-201ENST00000610494 4412 ntBASIC15.52■□□□□ 0.08
PCNAP12004 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCNAP12004 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCNAP12004 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCNAP12004 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.52■□□□□ 0.08
PCNAP12004 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCNAP12004 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.52■□□□□ 0.08
PCNAP12004 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCNAP12004 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCNAP12004 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCNAP12004 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.52■□□□□ 0.08
PCNAP12004 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
PCNAP12004 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.52■□□□□ 0.08
PCNAP12004 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.52■□□□□ 0.08
PCNAP12004 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
PCNAP12004 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.52■□□□□ 0.08
PCNAP12004 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PCNAP12004 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PCNAP12004 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.52■□□□□ 0.08
PCNAP12004 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PCNAP12004 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.52■□□□□ 0.08
PCNAP12004 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.52■□□□□ 0.08
PCNAP12004 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.52■□□□□ 0.08
PCNAP12004 AC061975.2-201ENST00000581722 295 ntBASIC15.52■□□□□ 0.08
PCNAP12004 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.52■□□□□ 0.08
PCNAP12004 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.52■□□□□ 0.08
PCNAP12004 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.52■□□□□ 0.08
PCNAP12004 AC022145.2-201ENST00000598203 171 ntBASIC15.52■□□□□ 0.08
PCNAP12004 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PCNAP12004 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
PCNAP12004 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
PCNAP12004 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PCNAP12004 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.52■□□□□ 0.07
PCNAP12004 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
PCNAP12004 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PCNAP12004 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PCNAP12004 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms