Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SIX3O95343 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.53■□□□□ 0.08
SIX3O95343 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SIX3O95343 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SIX3O95343 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
SIX3O95343 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.53■□□□□ 0.08
SIX3O95343 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SIX3O95343 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SIX3O95343 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SIX3O95343 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SIX3O95343 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SIX3O95343 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SIX3O95343 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SIX3O95343 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SIX3O95343 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SIX3O95343 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.53■□□□□ 0.08
SIX3O95343 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SIX3O95343 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
SIX3O95343 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.52■□□□□ 0.08
SIX3O95343 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
SIX3O95343 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
SIX3O95343 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SIX3O95343 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.52■□□□□ 0.08
SIX3O95343 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
SIX3O95343 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.52■□□□□ 0.08
SIX3O95343 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.52■□□□□ 0.08
SIX3O95343 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
SIX3O95343 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SIX3O95343 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SIX3O95343 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SIX3O95343 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.52■□□□□ 0.08
SIX3O95343 MKNK2P1-201ENST00000437526 628 ntBASIC15.52■□□□□ 0.08
SIX3O95343 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SIX3O95343 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.52■□□□□ 0.08
SIX3O95343 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.52■□□□□ 0.08
SIX3O95343 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.52■□□□□ 0.08
SIX3O95343 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.52■□□□□ 0.08
SIX3O95343 AL450472.2-201ENST00000603663 1156 ntBASIC15.52■□□□□ 0.08
SIX3O95343 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.52■□□□□ 0.08
SIX3O95343 AC084121.4-201ENST00000641598 221 ntBASIC15.52■□□□□ 0.08
SIX3O95343 AF228730.8-201ENST00000642140 221 ntBASIC15.52■□□□□ 0.08
SIX3O95343 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SIX3O95343 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
SIX3O95343 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
SIX3O95343 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.07
SIX3O95343 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SIX3O95343 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
SIX3O95343 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
SIX3O95343 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SIX3O95343 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.52■□□□□ 0.07
SIX3O95343 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
SIX3O95343 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.52■□□□□ 0.07
SIX3O95343 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SIX3O95343 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.52■□□□□ 0.07
SIX3O95343 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SIX3O95343 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
SIX3O95343 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
SIX3O95343 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SIX3O95343 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SIX3O95343 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.51■□□□□ 0.07
SIX3O95343 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.51■□□□□ 0.07
SIX3O95343 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.51■□□□□ 0.07
SIX3O95343 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SIX3O95343 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.51■□□□□ 0.07
SIX3O95343 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SIX3O95343 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.51■□□□□ 0.07
SIX3O95343 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
SIX3O95343 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
SIX3O95343 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.51■□□□□ 0.07
SIX3O95343 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.51■□□□□ 0.07
SIX3O95343 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SIX3O95343 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SIX3O95343 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
SIX3O95343 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
SIX3O95343 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.51■□□□□ 0.07
SIX3O95343 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.51■□□□□ 0.07
SIX3O95343 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.51■□□□□ 0.07
SIX3O95343 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.51■□□□□ 0.07
SIX3O95343 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.51■□□□□ 0.07
SIX3O95343 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.51■□□□□ 0.07
SIX3O95343 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
SIX3O95343 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.51■□□□□ 0.07
SIX3O95343 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SIX3O95343 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.51■□□□□ 0.07
SIX3O95343 RARRES2P9-201ENST00000565168 469 ntBASIC15.51■□□□□ 0.07
SIX3O95343 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.51■□□□□ 0.07
SIX3O95343 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SIX3O95343 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.51■□□□□ 0.07
SIX3O95343 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.51■□□□□ 0.07
SIX3O95343 MTDHP5-201ENST00000598980 586 ntBASIC15.51■□□□□ 0.07
SIX3O95343 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SIX3O95343 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.51■□□□□ 0.07
SIX3O95343 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SIX3O95343 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SIX3O95343 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.51■□□□□ 0.07
SIX3O95343 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SIX3O95343 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SIX3O95343 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SIX3O95343 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.51■□□□□ 0.07
SIX3O95343 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms