Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF40O75150 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF40O75150 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
RNF40O75150 UXT-AS1-201ENST00000590504 1525 ntBASIC17.21■□□□□ 0.35
RNF40O75150 AC012569.1-201ENST00000591191 1524 ntBASIC17.21■□□□□ 0.35
RNF40O75150 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RNF40O75150 CDC14C-201ENST00000428251 1719 ntBASIC17.21■□□□□ 0.35
RNF40O75150 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
RNF40O75150 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
RNF40O75150 LINC02447-202ENST00000501888 2146 ntBASIC17.21■□□□□ 0.35
RNF40O75150 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF40O75150 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
RNF40O75150 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RNF40O75150 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.21■□□□□ 0.35
RNF40O75150 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF40O75150 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF40O75150 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
RNF40O75150 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.21■□□□□ 0.35
RNF40O75150 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.21■□□□□ 0.35
RNF40O75150 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF40O75150 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
RNF40O75150 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.21■□□□□ 0.35
RNF40O75150 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
RNF40O75150 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF40O75150 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF40O75150 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
RNF40O75150 AC125807.1-201ENST00000483097 614 ntBASIC17.21■□□□□ 0.35
RNF40O75150 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF40O75150 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.21■□□□□ 0.35
RNF40O75150 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.21■□□□□ 0.35
RNF40O75150 AL009183.1-201ENST00000603760 355 ntBASIC17.21■□□□□ 0.35
RNF40O75150 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF40O75150 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF40O75150 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF40O75150 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF40O75150 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
RNF40O75150 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF40O75150 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
RNF40O75150 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
RNF40O75150 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
RNF40O75150 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
RNF40O75150 AC106881.1-201ENST00000605849 3329 ntBASIC17.21■□□□□ 0.34
RNF40O75150 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.34
RNF40O75150 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
RNF40O75150 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
RNF40O75150 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.2■□□□□ 0.34
RNF40O75150 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 FLJ16779-201ENST00000612722 7638 ntBASIC17.2■□□□□ 0.34
RNF40O75150 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.2■□□□□ 0.34
RNF40O75150 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF40O75150 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
RNF40O75150 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF40O75150 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
RNF40O75150 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF40O75150 AC107890.1-201ENST00000422478 521 ntBASIC17.2■□□□□ 0.34
RNF40O75150 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
RNF40O75150 AC190387.1-201ENST00000551683 408 ntBASIC17.2■□□□□ 0.34
RNF40O75150 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.2■□□□□ 0.34
RNF40O75150 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.2■□□□□ 0.34
RNF40O75150 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF40O75150 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.2■□□□□ 0.34
RNF40O75150 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
RNF40O75150 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
RNF40O75150 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.2■□□□□ 0.34
RNF40O75150 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
RNF40O75150 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.2■□□□□ 0.34
RNF40O75150 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
RNF40O75150 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF40O75150 GGT3P-204ENST00000453783 1664 ntBASIC17.2■□□□□ 0.34
RNF40O75150 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF40O75150 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC17.2■□□□□ 0.34
RNF40O75150 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 SSR4P1-203ENST00000599569 2260 ntBASIC17.19■□□□□ 0.34
RNF40O75150 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF40O75150 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
RNF40O75150 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms