Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
SDCBPO00560 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.57□□□□□ -0.24
SDCBPO00560 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.57□□□□□ -0.24
SDCBPO00560 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
SDCBPO00560 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.57□□□□□ -0.24
SDCBPO00560 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.57□□□□□ -0.24
SDCBPO00560 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC13.57□□□□□ -0.24
SDCBPO00560 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 TCAF2P1-201ENST00000291129 2421 ntBASIC13.57□□□□□ -0.24
SDCBPO00560 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
SDCBPO00560 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC13.57□□□□□ -0.24
SDCBPO00560 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC13.57□□□□□ -0.24
SDCBPO00560 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC13.57□□□□□ -0.24
SDCBPO00560 VMO1-203ENST00000416307 712 ntTSL 2 BASIC13.57□□□□□ -0.24
SDCBPO00560 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC13.57□□□□□ -0.24
SDCBPO00560 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 THTPA-204ENST00000554970 569 ntTSL 4 BASIC13.57□□□□□ -0.24
SDCBPO00560 THTPA-206ENST00000556015 535 ntTSL 3 BASIC13.57□□□□□ -0.24
SDCBPO00560 CD7-202ENST00000578509 925 ntTSL 3 BASIC13.57□□□□□ -0.24
SDCBPO00560 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC13.57□□□□□ -0.24
SDCBPO00560 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC13.57□□□□□ -0.24
SDCBPO00560 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 AL009183.1-201ENST00000603760 355 ntBASIC13.57□□□□□ -0.24
SDCBPO00560 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
SDCBPO00560 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
SDCBPO00560 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC13.57□□□□□ -0.24
SDCBPO00560 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 SBF1P1-201ENST00000444527 5631 ntBASIC13.57□□□□□ -0.24
SDCBPO00560 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
SDCBPO00560 LOX-206ENST00000639739 1626 ntTSL 5 BASIC13.57□□□□□ -0.24
SDCBPO00560 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.57□□□□□ -0.24
SDCBPO00560 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SDCBPO00560 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 AC090616.6-203ENST00000579186 1945 ntBASIC13.56□□□□□ -0.24
SDCBPO00560 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
SDCBPO00560 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SDCBPO00560 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
SDCBPO00560 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.56□□□□□ -0.24
SDCBPO00560 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC13.56□□□□□ -0.24
SDCBPO00560 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
SDCBPO00560 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC13.56□□□□□ -0.24
SDCBPO00560 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC13.56□□□□□ -0.24
SDCBPO00560 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.56□□□□□ -0.24
SDCBPO00560 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.56□□□□□ -0.24
SDCBPO00560 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC13.56□□□□□ -0.24
SDCBPO00560 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
SDCBPO00560 KRT18P34-201ENST00000488218 1270 ntBASIC13.56□□□□□ -0.24
SDCBPO00560 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC13.56□□□□□ -0.24
SDCBPO00560 SMN2-210ENST00000511812 867 ntTSL 2 BASIC13.56□□□□□ -0.24
SDCBPO00560 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC13.56□□□□□ -0.24
SDCBPO00560 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC13.56□□□□□ -0.24
SDCBPO00560 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC13.56□□□□□ -0.24
SDCBPO00560 AC120114.3-201ENST00000611923 658 ntBASIC13.56□□□□□ -0.24
SDCBPO00560 CAND2-206ENST00000626378 333 ntTSL 5 BASIC13.56□□□□□ -0.24
SDCBPO00560 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.56□□□□□ -0.24
SDCBPO00560 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SDCBPO00560 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SDCBPO00560 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.56□□□□□ -0.24
SDCBPO00560 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
SDCBPO00560 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SDCBPO00560 AC105250.1-201ENST00000509378 2057 ntBASIC13.55□□□□□ -0.24
SDCBPO00560 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms