Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AL645939.2-201ENST00000427340 991 ntBASIC15.31■□□□□ 0.04
SLC28A1O00337 ACTG1P14-201ENST00000446382 1122 ntBASIC15.31■□□□□ 0.04
SLC28A1O00337 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SLC28A1O00337 AC079140.1-201ENST00000508039 487 ntBASIC15.31■□□□□ 0.04
SLC28A1O00337 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.31■□□□□ 0.04
SLC28A1O00337 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.31■□□□□ 0.04
SLC28A1O00337 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.31■□□□□ 0.04
SLC28A1O00337 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.31■□□□□ 0.04
SLC28A1O00337 LINC01225-203ENST00000563550 1244 ntBASIC15.31■□□□□ 0.04
SLC28A1O00337 AC040169.1-201ENST00000565382 521 ntBASIC15.31■□□□□ 0.04
SLC28A1O00337 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.31■□□□□ 0.04
SLC28A1O00337 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.31■□□□□ 0.04
SLC28A1O00337 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.31■□□□□ 0.04
SLC28A1O00337 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SLC28A1O00337 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SLC28A1O00337 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SLC28A1O00337 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.31■□□□□ 0.04
SLC28A1O00337 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC28A1O00337 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
SLC28A1O00337 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.3■□□□□ 0.04
SLC28A1O00337 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 MCCD1P2-201ENST00000423228 335 ntBASIC15.3■□□□□ 0.04
SLC28A1O00337 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 KRT8P48-201ENST00000515599 1220 ntBASIC15.3■□□□□ 0.04
SLC28A1O00337 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.3■□□□□ 0.04
SLC28A1O00337 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
SLC28A1O00337 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
SLC28A1O00337 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.3■□□□□ 0.04
SLC28A1O00337 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.3■□□□□ 0.04
SLC28A1O00337 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC28A1O00337 C18orf15-201ENST00000623680 2534 ntBASIC15.3■□□□□ 0.04
SLC28A1O00337 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
SLC28A1O00337 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
SLC28A1O00337 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC28A1O00337 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.29■□□□□ 0.04
SLC28A1O00337 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 TNRC18P2-201ENST00000417666 2714 ntBASIC15.29■□□□□ 0.04
SLC28A1O00337 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC28A1O00337 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC28A1O00337 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC28A1O00337 EEF1DP4-201ENST00000446006 880 ntBASIC15.29■□□□□ 0.04
SLC28A1O00337 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.29■□□□□ 0.04
SLC28A1O00337 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.29■□□□□ 0.04
SLC28A1O00337 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.29■□□□□ 0.04
SLC28A1O00337 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.29■□□□□ 0.04
SLC28A1O00337 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.29■□□□□ 0.04
SLC28A1O00337 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC28A1O00337 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.29■□□□□ 0.04
SLC28A1O00337 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.29■□□□□ 0.04
SLC28A1O00337 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.29■□□□□ 0.04
SLC28A1O00337 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.29■□□□□ 0.04
SLC28A1O00337 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC28A1O00337 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.29■□□□□ 0.04
SLC28A1O00337 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.29■□□□□ 0.04
SLC28A1O00337 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SLC28A1O00337 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.29■□□□□ 0.04
SLC28A1O00337 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC28A1O00337 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC28A1O00337 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SLC28A1O00337 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
SLC28A1O00337 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms