Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 AC004840.1-201ENST00000636359 365 ntBASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 CICP4-201ENST00000447359 2812 ntBASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TMX2-CTNND1H3BSU7 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 KRT8P12-202ENST00000472924 1397 ntBASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 ATP5G2P4-201ENST00000442175 420 ntBASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 AC093724.1-201ENST00000448659 1027 ntBASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 MIR6069-201ENST00000620069 79 ntBASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TMX2-CTNND1H3BSU7 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 SPDYE17-201ENST00000412399 783 ntBASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 RN7SL752P-201ENST00000463779 287 ntBASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 AL033527.5-202ENST00000641632 1098 ntBASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 AL589702.1-201ENST00000641229 1509 ntBASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
TMX2-CTNND1H3BSU7 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms