Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 AP3S2-216ENST00000617003 1561 ntBASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 AL136379.1-201ENST00000623471 2642 ntBASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 AC106881.1-201ENST00000605849 3329 ntBASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 AL607033.1-201ENST00000623900 1599 ntBASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LIMA1Q9UHB6 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 SPDYE11-202ENST00000450699 704 ntBASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 SPDYE9P-201ENST00000570642 692 ntBASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 AC026979.3-201ENST00000607315 403 ntBASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 SPDYE10P-202ENST00000612005 668 ntBASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 SPDYE8P-202ENST00000612377 668 ntBASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMA1Q9UHB6 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMA1Q9UHB6 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms