Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 AL031432.2-201ENST00000566714 459 ntBASIC13.94□□□□□ -0.18
NKX3-1Q99801 AL928711.1-201ENST00000570165 459 ntBASIC13.94□□□□□ -0.18
NKX3-1Q99801 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 AC087481.3-201ENST00000602886 1894 ntBASIC13.94□□□□□ -0.18
NKX3-1Q99801 AC104109.2-201ENST00000602919 1418 ntBASIC13.94□□□□□ -0.18
NKX3-1Q99801 CAND2-206ENST00000626378 333 ntTSL 5 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 AC010507.1-201ENST00000633895 436 ntBASIC13.94□□□□□ -0.18
NKX3-1Q99801 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.94□□□□□ -0.18
NKX3-1Q99801 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 AC090616.6-203ENST00000579186 1945 ntBASIC13.94□□□□□ -0.18
NKX3-1Q99801 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 POLD2P1-201ENST00000511220 997 ntBASIC13.93□□□□□ -0.18
NKX3-1Q99801 CD7-202ENST00000578509 925 ntTSL 3 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NKX3-1Q99801 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
NKX3-1Q99801 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 AL009178.2-201ENST00000597278 2719 ntBASIC13.92□□□□□ -0.18
NKX3-1Q99801 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 KRT18P58-201ENST00000527480 1120 ntBASIC13.92□□□□□ -0.18
NKX3-1Q99801 UNC93B6-202ENST00000528242 690 ntBASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 590.2 ms