Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AC078925.2-201ENST00000624013 1973 ntBASIC15.36■□□□□ 0.05
VPS13AQ96RL7 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AC106794.1-201ENST00000506935 792 ntBASIC15.36■□□□□ 0.05
VPS13AQ96RL7 NSD1-211ENST00000511258 809 ntTSL 3 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AP003392.6-201ENST00000607709 325 ntBASIC15.36■□□□□ 0.05
VPS13AQ96RL7 MIR6842-201ENST00000612539 65 ntBASIC15.36■□□□□ 0.05
VPS13AQ96RL7 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 GGT3P-204ENST00000453783 1664 ntBASIC15.35■□□□□ 0.05
VPS13AQ96RL7 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 AC005915.1-201ENST00000624912 2018 ntBASIC15.35■□□□□ 0.05
VPS13AQ96RL7 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 GAPDHP40-201ENST00000505218 1006 ntBASIC15.35■□□□□ 0.05
VPS13AQ96RL7 AC019193.1-201ENST00000506678 823 ntBASIC15.35■□□□□ 0.05
VPS13AQ96RL7 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 BX539320.1-201ENST00000623759 877 ntBASIC15.35■□□□□ 0.05
VPS13AQ96RL7 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 SYT17-208ENST00000568433 812 ntTSL 3 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13AQ96RL7 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 RNU1-114P-201ENST00000365297 166 ntBASIC15.34■□□□□ 0.05
VPS13AQ96RL7 AC078991.1-201ENST00000437297 610 ntBASIC15.34■□□□□ 0.05
VPS13AQ96RL7 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 AC004923.1-202ENST00000642106 209 ntBASIC15.34■□□□□ 0.05
VPS13AQ96RL7 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 AC025271.4-201ENST00000621477 1726 ntBASIC15.34■□□□□ 0.05
VPS13AQ96RL7 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 AL157792.1-201ENST00000488281 530 ntBASIC15.34■□□□□ 0.05
VPS13AQ96RL7 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 SLC16A6P1-201ENST00000413214 1059 ntBASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms