Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 AC142381.1-201ENST00000426099 345 ntBASIC15.3■□□□□ 0.04
VMP1Q96GC9 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 GGT3P-204ENST00000453783 1664 ntBASIC15.3■□□□□ 0.04
VMP1Q96GC9 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 PCGF3-213ENST00000620529 1899 ntBASIC15.3■□□□□ 0.04
VMP1Q96GC9 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VMP1Q96GC9 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.3■□□□□ 0.04
VMP1Q96GC9 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 AP001059.3-201ENST00000619053 235 ntBASIC15.29■□□□□ 0.04
VMP1Q96GC9 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VMP1Q96GC9 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 AC138035.3-201ENST00000622706 2791 ntBASIC15.29■□□□□ 0.04
VMP1Q96GC9 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 LINC01144-201ENST00000626198 1710 ntBASIC15.29■□□□□ 0.04
VMP1Q96GC9 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VMP1Q96GC9 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.28■□□□□ 0.04
VMP1Q96GC9 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.28■□□□□ 0.04
VMP1Q96GC9 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VMP1Q96GC9 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms