Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB4Q8WW32 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB4Q8WW32 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.88■□□□□ 0.13
HMGB4Q8WW32 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB4Q8WW32 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB4Q8WW32 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB4Q8WW32 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB4Q8WW32 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB4Q8WW32 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
HMGB4Q8WW32 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB4Q8WW32 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 AC079328.2-201ENST00000561241 3354 ntBASIC15.87■□□□□ 0.13
HMGB4Q8WW32 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 MIR1908-201ENST00000410394 80 ntBASIC15.87■□□□□ 0.13
HMGB4Q8WW32 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 RPL7P3-201ENST00000441388 714 ntBASIC15.87■□□□□ 0.13
HMGB4Q8WW32 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 AC009486.1-201ENST00000569860 813 ntBASIC15.87■□□□□ 0.13
HMGB4Q8WW32 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB4Q8WW32 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 AC007551.1-201ENST00000457394 519 ntBASIC15.86■□□□□ 0.13
HMGB4Q8WW32 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB4Q8WW32 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms