Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 AC015911.4-201ENST00000588022 1070 ntBASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 CDC14C-201ENST00000428251 1719 ntBASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 AC022532.1-201ENST00000624563 1728 ntBASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 AC126177.1-201ENST00000547829 2218 ntBASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 REXO1L8P-201ENST00000604378 1897 ntBASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 SUPT20HL2-201ENST00000486479 2409 ntBASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC13.29□□□□□ -0.28
PDLIM3Q53GG5 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 HNRNPFP1-201ENST00000391730 1133 ntBASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 HCG4B-203ENST00000450128 991 ntBASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 CD63-210ENST00000550776 870 ntTSL 5 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 AC005412.3-201ENST00000580309 715 ntBASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 AP001350.2-201ENST00000625104 1094 ntBASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 AL805961.1-202ENST00000641562 540 ntBASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PDLIM3Q53GG5 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 LINC02447-202ENST00000501888 2146 ntBASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 ACE-203ENST00000413513 2237 ntTSL 2 BASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
PDLIM3Q53GG5 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 NEK7-201ENST00000367383 586 ntTSL 2 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 MIR661-201ENST00000384842 89 ntBASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 HCG4-201ENST00000418983 998 ntBASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 NAA50-208ENST00000497255 789 ntTSL 5 BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms