Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
PKNOX1P55347 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.64■□□□□ 0.09
PKNOX1P55347 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.64■□□□□ 0.09
PKNOX1P55347 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.64■□□□□ 0.09
PKNOX1P55347 RPL13AP23-201ENST00000480739 586 ntBASIC15.64■□□□□ 0.09
PKNOX1P55347 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.64■□□□□ 0.09
PKNOX1P55347 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.64■□□□□ 0.09
PKNOX1P55347 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.64■□□□□ 0.09
PKNOX1P55347 AC024267.1-201ENST00000582320 895 ntBASIC15.64■□□□□ 0.09
PKNOX1P55347 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.64■□□□□ 0.09
PKNOX1P55347 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.64■□□□□ 0.09
PKNOX1P55347 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.64■□□□□ 0.09
PKNOX1P55347 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PKNOX1P55347 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.64■□□□□ 0.09
PKNOX1P55347 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.63■□□□□ 0.09
PKNOX1P55347 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
PKNOX1P55347 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC15.63■□□□□ 0.09
PKNOX1P55347 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.63■□□□□ 0.09
PKNOX1P55347 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
PKNOX1P55347 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.63■□□□□ 0.09
PKNOX1P55347 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
PKNOX1P55347 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
PKNOX1P55347 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.63■□□□□ 0.09
PKNOX1P55347 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.63■□□□□ 0.09
PKNOX1P55347 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 AC105233.2-201ENST00000523697 349 ntBASIC15.63■□□□□ 0.09
PKNOX1P55347 AF228730.5-201ENST00000530288 346 ntBASIC15.63■□□□□ 0.09
PKNOX1P55347 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.63■□□□□ 0.09
PKNOX1P55347 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.63■□□□□ 0.09
PKNOX1P55347 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.63■□□□□ 0.09
PKNOX1P55347 RARRES2P8-201ENST00000566335 367 ntBASIC15.63■□□□□ 0.09
PKNOX1P55347 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.63■□□□□ 0.09
PKNOX1P55347 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.63■□□□□ 0.09
PKNOX1P55347 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.63■□□□□ 0.09
PKNOX1P55347 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.63■□□□□ 0.09
PKNOX1P55347 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
PKNOX1P55347 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
PKNOX1P55347 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.63■□□□□ 0.09
PKNOX1P55347 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PKNOX1P55347 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PKNOX1P55347 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PKNOX1P55347 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PKNOX1P55347 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PKNOX1P55347 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PKNOX1P55347 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
PKNOX1P55347 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
PKNOX1P55347 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.62■□□□□ 0.09
PKNOX1P55347 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
PKNOX1P55347 AC134407.2-201ENST00000625089 1978 ntBASIC15.62■□□□□ 0.09
PKNOX1P55347 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.62■□□□□ 0.09
PKNOX1P55347 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PKNOX1P55347 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PKNOX1P55347 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
PKNOX1P55347 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
PKNOX1P55347 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PKNOX1P55347 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
PKNOX1P55347 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PKNOX1P55347 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PKNOX1P55347 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.62■□□□□ 0.09
PKNOX1P55347 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.62■□□□□ 0.09
PKNOX1P55347 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PKNOX1P55347 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.62■□□□□ 0.09
PKNOX1P55347 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.62■□□□□ 0.09
PKNOX1P55347 AC243562.2-201ENST00000561247 970 ntBASIC15.62■□□□□ 0.09
PKNOX1P55347 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.62■□□□□ 0.09
PKNOX1P55347 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.62■□□□□ 0.09
PKNOX1P55347 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PKNOX1P55347 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.62■□□□□ 0.09
PKNOX1P55347 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.62■□□□□ 0.09
PKNOX1P55347 AC099522.2-201ENST00000607001 744 ntBASIC15.62■□□□□ 0.09
PKNOX1P55347 SPTSSB-204ENST00000617024 1292 ntBASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms