Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.03■□□□□ 0.32
VCPP55072 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
VCPP55072 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.03■□□□□ 0.32
VCPP55072 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.03■□□□□ 0.32
VCPP55072 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.03■□□□□ 0.32
VCPP55072 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.03■□□□□ 0.32
VCPP55072 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.03■□□□□ 0.32
VCPP55072 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.03■□□□□ 0.32
VCPP55072 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.03■□□□□ 0.32
VCPP55072 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VCPP55072 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.03■□□□□ 0.32
VCPP55072 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.03■□□□□ 0.32
VCPP55072 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.03■□□□□ 0.32
VCPP55072 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 AC004790.1-201ENST00000612686 536 ntBASIC17.03■□□□□ 0.32
VCPP55072 MIR6775-201ENST00000617557 69 ntBASIC17.03■□□□□ 0.32
VCPP55072 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.03■□□□□ 0.32
VCPP55072 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.03■□□□□ 0.32
VCPP55072 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VCPP55072 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.03■□□□□ 0.32
VCPP55072 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.03■□□□□ 0.32
VCPP55072 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VCPP55072 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCPP55072 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
VCPP55072 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 AL391825.1-201ENST00000457671 1364 ntBASIC17.02■□□□□ 0.32
VCPP55072 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
VCPP55072 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.02■□□□□ 0.32
VCPP55072 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
VCPP55072 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.02■□□□□ 0.32
VCPP55072 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.02■□□□□ 0.32
VCPP55072 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.02■□□□□ 0.32
VCPP55072 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.02■□□□□ 0.32
VCPP55072 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.02■□□□□ 0.32
VCPP55072 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
VCPP55072 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
VCPP55072 TMEM14DP-201ENST00000422205 345 ntBASIC17.02■□□□□ 0.32
VCPP55072 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 BNIP3P42-201ENST00000454982 569 ntBASIC17.02■□□□□ 0.32
VCPP55072 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
VCPP55072 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
VCPP55072 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
VCPP55072 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.02■□□□□ 0.32
VCPP55072 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.02■□□□□ 0.32
VCPP55072 BNIP3P29-201ENST00000598302 571 ntBASIC17.02■□□□□ 0.32
VCPP55072 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 AC133552.6-201ENST00000613406 534 ntBASIC17.02■□□□□ 0.32
VCPP55072 AC011447.5-201ENST00000616168 564 ntBASIC17.02■□□□□ 0.32
VCPP55072 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.02■□□□□ 0.32
VCPP55072 AC007431.3-201ENST00000623221 587 ntBASIC17.02■□□□□ 0.32
VCPP55072 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.02■□□□□ 0.32
VCPP55072 AL109936.8-201ENST00000641772 604 ntBASIC17.02■□□□□ 0.32
VCPP55072 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VCPP55072 FLJ16779-201ENST00000612722 7638 ntBASIC17.02■□□□□ 0.32
VCPP55072 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.02■□□□□ 0.31
VCPP55072 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.02■□□□□ 0.31
VCPP55072 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VCPP55072 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.02■□□□□ 0.31
VCPP55072 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.02■□□□□ 0.31
VCPP55072 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VCPP55072 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.02■□□□□ 0.31
VCPP55072 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
VCPP55072 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
VCPP55072 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VCPP55072 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VCPP55072 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VCPP55072 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.01■□□□□ 0.31
VCPP55072 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCPP55072 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms