Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HTTP42858 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.41■□□□□ 0.38
HTTP42858 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC17.41■□□□□ 0.38
HTTP42858 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.41■□□□□ 0.38
HTTP42858 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 NOC2LP1-201ENST00000450578 752 ntBASIC17.41■□□□□ 0.38
HTTP42858 AC100850.1-201ENST00000506768 649 ntBASIC17.41■□□□□ 0.38
HTTP42858 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC17.41■□□□□ 0.38
HTTP42858 AC087045.2-201ENST00000606279 1003 ntBASIC17.41■□□□□ 0.38
HTTP42858 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 PCDH8P1-201ENST00000428983 2773 ntBASIC17.41■□□□□ 0.38
HTTP42858 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
HTTP42858 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC17.41■□□□□ 0.38
HTTP42858 CAP2P1-201ENST00000557743 1390 ntBASIC17.41■□□□□ 0.38
HTTP42858 AL139384.1-201ENST00000612143 3047 ntBASIC17.41■□□□□ 0.38
HTTP42858 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HTTP42858 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC17.41■□□□□ 0.38
HTTP42858 ISCA2P1-201ENST00000425548 448 ntBASIC17.41■□□□□ 0.38
HTTP42858 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17.41■□□□□ 0.38
HTTP42858 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC17.41■□□□□ 0.38
HTTP42858 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC17.41■□□□□ 0.38
HTTP42858 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
HTTP42858 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC17.41■□□□□ 0.38
HTTP42858 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HTTP42858 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
HTTP42858 TPM3P8-201ENST00000330554 643 ntBASIC17.41■□□□□ 0.38
HTTP42858 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 AL139008.1-201ENST00000437894 228 ntBASIC17.41■□□□□ 0.38
HTTP42858 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC17.41■□□□□ 0.38
HTTP42858 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC17.41■□□□□ 0.38
HTTP42858 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.41■□□□□ 0.38
HTTP42858 MIR4649-201ENST00000582839 64 ntBASIC17.41■□□□□ 0.38
HTTP42858 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HTTP42858 AC103691.2-201ENST00000618824 433 ntBASIC17.41■□□□□ 0.38
HTTP42858 AC148477.9-201ENST00000623974 539 ntBASIC17.41■□□□□ 0.38
HTTP42858 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HTTP42858 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HTTP42858 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HTTP42858 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HTTP42858 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HTTP42858 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
HTTP42858 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HTTP42858 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.4■□□□□ 0.38
HTTP42858 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.4■□□□□ 0.38
HTTP42858 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
HTTP42858 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC17.4■□□□□ 0.38
HTTP42858 AC092171.5-201ENST00000608012 942 ntBASIC17.4■□□□□ 0.38
HTTP42858 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC17.4■□□□□ 0.38
HTTP42858 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HTTP42858 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HTTP42858 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HTTP42858 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HTTP42858 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HTTP42858 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC17.4■□□□□ 0.38
HTTP42858 POU5F1P6-201ENST00000466990 990 ntBASIC17.4■□□□□ 0.38
HTTP42858 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC17.4■□□□□ 0.38
HTTP42858 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HTTP42858 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HTTP42858 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
HTTP42858 ALOX12P2-203ENST00000570921 1945 ntBASIC17.39■□□□□ 0.38
HTTP42858 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HTTP42858 CHMP1AP1-201ENST00000445563 662 ntBASIC17.39■□□□□ 0.37
HTTP42858 AL118516.1-201ENST00000564152 670 ntBASIC17.39■□□□□ 0.37
HTTP42858 AC020922.3-201ENST00000595064 547 ntBASIC17.39■□□□□ 0.37
HTTP42858 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HTTP42858 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.39■□□□□ 0.37
HTTP42858 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.39■□□□□ 0.37
HTTP42858 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC17.39■□□□□ 0.37
HTTP42858 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
HTTP42858 GHSR-202ENST00000427970 912 ntBASIC17.39■□□□□ 0.37
HTTP42858 RTN3P1-201ENST00000536295 711 ntBASIC17.39■□□□□ 0.37
HTTP42858 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
HTTP42858 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC17.39■□□□□ 0.37
HTTP42858 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.39■□□□□ 0.37
HTTP42858 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HTTP42858 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
HTTP42858 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HTTP42858 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.39■□□□□ 0.37
HTTP42858 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
HTTP42858 EID1-202ENST00000560490 584 ntTSL 3 BASIC17.38■□□□□ 0.37
HTTP42858 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC17.38■□□□□ 0.37
HTTP42858 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC17.38■□□□□ 0.37
HTTP42858 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HTTP42858 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HTTP42858 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.38■□□□□ 0.37
HTTP42858 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
HTTP42858 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HTTP42858 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC17.38■□□□□ 0.37
HTTP42858 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HTTP42858 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms