Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 AL136379.1-201ENST00000623471 2642 ntBASIC12.17□□□□□ -0.46
HLA-DMBP28068 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 LRRFIP1P1-201ENST00000498774 2246 ntBASIC12.17□□□□□ -0.46
HLA-DMBP28068 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 TPO-203ENST00000346956 2923 ntTSL 5 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 AC009090.5-201ENST00000624886 2285 ntBASIC12.16□□□□□ -0.46
HLA-DMBP28068 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 AC004967.1-201ENST00000453589 447 ntBASIC12.16□□□□□ -0.46
HLA-DMBP28068 AC074386.1-202ENST00000463561 864 ntBASIC12.16□□□□□ -0.46
HLA-DMBP28068 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 AP002472.1-201ENST00000577490 586 ntBASIC12.16□□□□□ -0.46
HLA-DMBP28068 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 AC087481.3-201ENST00000602886 1894 ntBASIC12.16□□□□□ -0.46
HLA-DMBP28068 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 AC138035.3-201ENST00000622706 2791 ntBASIC12.16□□□□□ -0.46
HLA-DMBP28068 AL365209.1-201ENST00000624418 6473 ntBASIC12.16□□□□□ -0.46
HLA-DMBP28068 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HLA-DMBP28068 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DMBP28068 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 AC011477.6-201ENST00000604980 1927 ntBASIC12.15□□□□□ -0.46
HLA-DMBP28068 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 REM2-202ENST00000536884 1331 ntTSL 2 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms