Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
BDNFP23560 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
BDNFP23560 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
BDNFP23560 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.7■□□□□ 0.26
BDNFP23560 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.7■□□□□ 0.26
BDNFP23560 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.7■□□□□ 0.26
BDNFP23560 AC098850.1-201ENST00000419919 790 ntBASIC16.7■□□□□ 0.26
BDNFP23560 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.7■□□□□ 0.26
BDNFP23560 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
BDNFP23560 MYCLP2-201ENST00000449268 967 ntBASIC16.7■□□□□ 0.26
BDNFP23560 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.7■□□□□ 0.26
BDNFP23560 SLED1-202ENST00000512051 380 ntBASIC16.7■□□□□ 0.26
BDNFP23560 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
BDNFP23560 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.7■□□□□ 0.26
BDNFP23560 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.7■□□□□ 0.26
BDNFP23560 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.7■□□□□ 0.26
BDNFP23560 AC099568.2-201ENST00000609194 695 ntBASIC16.7■□□□□ 0.26
BDNFP23560 MIR8072-201ENST00000614241 80 ntBASIC16.7■□□□□ 0.26
BDNFP23560 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
BDNFP23560 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.7■□□□□ 0.26
BDNFP23560 AL158212.4-201ENST00000624062 1286 ntBASIC16.7■□□□□ 0.26
BDNFP23560 AL035252.4-201ENST00000624174 288 ntBASIC16.7■□□□□ 0.26
BDNFP23560 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.7■□□□□ 0.26
BDNFP23560 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.7■□□□□ 0.26
BDNFP23560 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.7■□□□□ 0.26
BDNFP23560 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.7■□□□□ 0.26
BDNFP23560 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
BDNFP23560 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
BDNFP23560 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
BDNFP23560 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.69■□□□□ 0.26
BDNFP23560 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
BDNFP23560 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
BDNFP23560 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.69■□□□□ 0.26
BDNFP23560 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 MIR4313-201ENST00000580760 101 ntBASIC16.69■□□□□ 0.26
BDNFP23560 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.69■□□□□ 0.26
BDNFP23560 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.69■□□□□ 0.26
BDNFP23560 AC093726.1-201ENST00000608064 963 ntBASIC16.69■□□□□ 0.26
BDNFP23560 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.69■□□□□ 0.26
BDNFP23560 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.69■□□□□ 0.26
BDNFP23560 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.69■□□□□ 0.26
BDNFP23560 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.69■□□□□ 0.26
BDNFP23560 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
BDNFP23560 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BDNFP23560 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.69■□□□□ 0.26
BDNFP23560 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms