Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VCANP13611 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCANP13611 SOD2-202ENST00000367054 815 ntTSL 2 BASIC16.06■□□□□ 0.16
VCANP13611 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
VCANP13611 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC16.06■□□□□ 0.16
VCANP13611 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.05■□□□□ 0.16
VCANP13611 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.05■□□□□ 0.16
VCANP13611 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCANP13611 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.05■□□□□ 0.16
VCANP13611 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.05■□□□□ 0.16
VCANP13611 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCANP13611 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCANP13611 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.05■□□□□ 0.16
VCANP13611 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCANP13611 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VCANP13611 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC16.05■□□□□ 0.16
VCANP13611 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCANP13611 AC104073.2-201ENST00000453737 312 ntBASIC16.05■□□□□ 0.16
VCANP13611 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.05■□□□□ 0.16
VCANP13611 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC16.05■□□□□ 0.16
VCANP13611 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCANP13611 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC16.05■□□□□ 0.16
VCANP13611 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCANP13611 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCANP13611 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCANP13611 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCANP13611 KRT17P4-201ENST00000429445 819 ntBASIC16.05■□□□□ 0.16
VCANP13611 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC16.05■□□□□ 0.16
VCANP13611 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
VCANP13611 AC103810.10-201ENST00000606504 343 ntBASIC16.05■□□□□ 0.16
VCANP13611 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
VCANP13611 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.05■□□□□ 0.16
VCANP13611 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCANP13611 AL603756.1-201ENST00000606511 2163 ntBASIC16.05■□□□□ 0.16
VCANP13611 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VCANP13611 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.05■□□□□ 0.16
VCANP13611 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VCANP13611 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VCANP13611 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.04■□□□□ 0.16
VCANP13611 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC16.04■□□□□ 0.16
VCANP13611 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
VCANP13611 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.04■□□□□ 0.16
VCANP13611 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
VCANP13611 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC16.04■□□□□ 0.16
VCANP13611 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 COX20P1-201ENST00000366529 357 ntBASIC16.04■□□□□ 0.16
VCANP13611 HNRNPA1P58-201ENST00000403629 610 ntBASIC16.04■□□□□ 0.16
VCANP13611 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.04■□□□□ 0.16
VCANP13611 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC16.04■□□□□ 0.16
VCANP13611 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 CR392039.1-201ENST00000623217 204 ntBASIC16.04■□□□□ 0.16
VCANP13611 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
VCANP13611 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
VCANP13611 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.04■□□□□ 0.16
VCANP13611 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VCANP13611 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.04■□□□□ 0.16
VCANP13611 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 AC116353.5-201ENST00000638148 1699 ntBASIC16.03■□□□□ 0.16
VCANP13611 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.03■□□□□ 0.16
VCANP13611 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 RN7SKP214-201ENST00000364208 315 ntBASIC16.03■□□□□ 0.16
VCANP13611 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC16.03■□□□□ 0.16
VCANP13611 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.03■□□□□ 0.16
VCANP13611 HCG18-241ENST00000602290 821 ntTSL 2 BASIC16.03■□□□□ 0.16
VCANP13611 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.03■□□□□ 0.16
VCANP13611 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.03■□□□□ 0.16
VCANP13611 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VCANP13611 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.03■□□□□ 0.16
VCANP13611 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.03■□□□□ 0.16
VCANP13611 AC073911.3-201ENST00000624401 631 ntBASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms