Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.57■□□□□ 0.4
TPM1P09493 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
TPM1P09493 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.57■□□□□ 0.4
TPM1P09493 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
TPM1P09493 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.57■□□□□ 0.4
TPM1P09493 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
TPM1P09493 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.57■□□□□ 0.4
TPM1P09493 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
TPM1P09493 MIR4321-201ENST00000592276 80 ntBASIC17.57■□□□□ 0.4
TPM1P09493 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 CICP24-201ENST00000605464 2705 ntBASIC17.57■□□□□ 0.4
TPM1P09493 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TPM1P09493 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.57■□□□□ 0.4
TPM1P09493 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 AC105250.1-201ENST00000509378 2057 ntBASIC17.57■□□□□ 0.4
TPM1P09493 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TPM1P09493 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.57■□□□□ 0.4
TPM1P09493 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.57■□□□□ 0.4
TPM1P09493 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
TPM1P09493 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.57■□□□□ 0.4
TPM1P09493 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.57■□□□□ 0.4
TPM1P09493 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
TPM1P09493 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.56■□□□□ 0.4
TPM1P09493 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 AP002414.3-201ENST00000589352 1468 ntBASIC17.56■□□□□ 0.4
TPM1P09493 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
TPM1P09493 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.56■□□□□ 0.4
TPM1P09493 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.56■□□□□ 0.4
TPM1P09493 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC17.56■□□□□ 0.4
TPM1P09493 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TPM1P09493 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.56■□□□□ 0.4
TPM1P09493 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TPM1P09493 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.56■□□□□ 0.4
TPM1P09493 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.56■□□□□ 0.4
TPM1P09493 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.56■□□□□ 0.4
TPM1P09493 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.56■□□□□ 0.4
TPM1P09493 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.56■□□□□ 0.4
TPM1P09493 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.56■□□□□ 0.4
TPM1P09493 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.56■□□□□ 0.4
TPM1P09493 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.56■□□□□ 0.4
TPM1P09493 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TPM1P09493 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.56■□□□□ 0.4
TPM1P09493 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.56■□□□□ 0.4
TPM1P09493 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC17.56■□□□□ 0.4
TPM1P09493 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.56■□□□□ 0.4
TPM1P09493 AC090616.6-203ENST00000579186 1945 ntBASIC17.56■□□□□ 0.4
TPM1P09493 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
TPM1P09493 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TPM1P09493 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.55■□□□□ 0.4
TPM1P09493 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.55■□□□□ 0.4
TPM1P09493 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17.55■□□□□ 0.4
TPM1P09493 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC17.55■□□□□ 0.4
TPM1P09493 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC17.55■□□□□ 0.4
TPM1P09493 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms