Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC20.6■□□□□ 0.89
COL3A1P02461 BAATP1-201ENST00000412284 1225 ntBASIC20.6■□□□□ 0.89
COL3A1P02461 ATP5G2P4-201ENST00000442175 420 ntBASIC20.6■□□□□ 0.89
COL3A1P02461 FTH1P14-201ENST00000482930 551 ntBASIC20.6■□□□□ 0.89
COL3A1P02461 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
COL3A1P02461 PTP4A1P2-201ENST00000546033 454 ntBASIC20.6■□□□□ 0.89
COL3A1P02461 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC20.6■□□□□ 0.89
COL3A1P02461 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC20.6■□□□□ 0.89
COL3A1P02461 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
COL3A1P02461 MIR4259-201ENST00000584466 101 ntBASIC20.6■□□□□ 0.89
COL3A1P02461 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC20.6■□□□□ 0.89
COL3A1P02461 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 PDIA3P1-201ENST00000471856 1510 ntBASIC20.6■□□□□ 0.89
COL3A1P02461 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC20.6■□□□□ 0.89
COL3A1P02461 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL3A1P02461 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC20.6■□□□□ 0.89
COL3A1P02461 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL3A1P02461 REXO1L4P-201ENST00000605109 1937 ntBASIC20.59■□□□□ 0.89
COL3A1P02461 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL3A1P02461 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL3A1P02461 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL3A1P02461 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC20.59■□□□□ 0.89
COL3A1P02461 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL3A1P02461 GK-202ENST00000378941 458 ntTSL 3 BASIC20.59■□□□□ 0.89
COL3A1P02461 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL3A1P02461 MPV17-206ENST00000402722 827 ntTSL 3 BASIC20.59■□□□□ 0.89
COL3A1P02461 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL3A1P02461 USB1-202ENST00000423271 1217 ntTSL 2 BASIC20.59■□□□□ 0.89
COL3A1P02461 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC20.59■□□□□ 0.89
COL3A1P02461 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC20.59■□□□□ 0.89
COL3A1P02461 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC20.59■□□□□ 0.89
COL3A1P02461 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC20.59■□□□□ 0.89
COL3A1P02461 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL3A1P02461 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL3A1P02461 SAMD11P1-201ENST00000571429 661 ntBASIC20.59■□□□□ 0.89
COL3A1P02461 IFT20-216ENST00000588477 774 ntTSL 5 BASIC20.59■□□□□ 0.89
COL3A1P02461 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC20.59■□□□□ 0.89
COL3A1P02461 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL3A1P02461 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL3A1P02461 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC20.59■□□□□ 0.89
COL3A1P02461 AL138709.1-201ENST00000614840 1693 ntBASIC20.59■□□□□ 0.89
COL3A1P02461 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL3A1P02461 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
COL3A1P02461 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
COL3A1P02461 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC20.59■□□□□ 0.89
COL3A1P02461 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL3A1P02461 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
COL3A1P02461 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
COL3A1P02461 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL3A1P02461 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL3A1P02461 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC20.58■□□□□ 0.89
COL3A1P02461 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC20.58■□□□□ 0.89
COL3A1P02461 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL3A1P02461 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL3A1P02461 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL3A1P02461 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL3A1P02461 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL3A1P02461 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL3A1P02461 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL3A1P02461 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL3A1P02461 B9D1-203ENST00000395615 805 ntTSL 3 BASIC20.58■□□□□ 0.89
COL3A1P02461 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
COL3A1P02461 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC20.58■□□□□ 0.89
COL3A1P02461 SLC25A47P1-201ENST00000531577 414 ntBASIC20.58■□□□□ 0.89
COL3A1P02461 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
COL3A1P02461 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL3A1P02461 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL3A1P02461 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL3A1P02461 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL3A1P02461 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL3A1P02461 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC20.58■□□□□ 0.88
COL3A1P02461 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC20.58■□□□□ 0.88
COL3A1P02461 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL3A1P02461 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
COL3A1P02461 KRT8P44-201ENST00000441609 1350 ntBASIC20.58■□□□□ 0.88
COL3A1P02461 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL3A1P02461 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC20.57■□□□□ 0.88
COL3A1P02461 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 MGST3-203ENST00000367885 680 ntTSL 2 BASIC20.57■□□□□ 0.88
COL3A1P02461 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL3A1P02461 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC20.57■□□□□ 0.88
COL3A1P02461 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
COL3A1P02461 AC022210.1-201ENST00000449856 793 ntBASIC20.57■□□□□ 0.88
COL3A1P02461 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC20.57■□□□□ 0.88
COL3A1P02461 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC20.57■□□□□ 0.88
COL3A1P02461 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
COL3A1P02461 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC20.57■□□□□ 0.88
COL3A1P02461 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms