Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHANK3Q9BYB0 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 AL136309.1-201ENST00000403917 691 ntBASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 NUP210P1-202ENST00000504322 710 ntBASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 SAMD11P1-201ENST00000571429 661 ntBASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 AC018635.2-201ENST00000608625 364 ntBASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 AC007787.1-201ENST00000588095 1583 ntBASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK3Q9BYB0 AC005332.8-201ENST00000622750 2735 ntBASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 AC234644.1-201ENST00000406065 370 ntBASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 AC004066.1-201ENST00000502488 802 ntBASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 AC245884.6-201ENST00000515672 1067 ntBASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 AC244452.3-201ENST00000636814 210 ntBASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 CFL1-214ENST00000534769 758 ntTSL 2 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 AC007663.3-201ENST00000609632 465 ntBASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 AP000346.4-201ENST00000614827 381 ntBASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 MIR7845-201ENST00000618396 99 ntBASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 AC091544.8-201ENST00000619490 361 ntBASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC20.05■□□□□ 0.8
SHANK3Q9BYB0 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 CLUHP2-201ENST00000426660 1303 ntBASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 PGR-209ENST00000617858 2816 ntTSL 5 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 HNRNPA1P63-201ENST00000427917 963 ntBASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 CHMP1AP1-201ENST00000445563 662 ntBASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 PFN2-205ENST00000461868 613 ntTSL 2 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 RN7SL11P-201ENST00000471305 293 ntBASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms