Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 POLD2P1-201ENST00000511220 997 ntBASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 MIR4321-201ENST00000592276 80 ntBASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 RNA5SP416-201ENST00000516838 111 ntBASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 AC091812.2-201ENST00000619081 385 ntBASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM56Q9BRZ2 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 MIR940-201ENST00000401276 94 ntBASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 AC027601.4-201ENST00000611259 610 ntBASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 AL161645.1-201ENST00000622716 1255 ntBASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM56Q9BRZ2 TNRC18P2-201ENST00000417666 2714 ntBASIC16.27■□□□□ 0.19
TRIM56Q9BRZ2 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM56Q9BRZ2 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.27■□□□□ 0.19
TRIM56Q9BRZ2 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
TRIM56Q9BRZ2 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM56Q9BRZ2 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM56Q9BRZ2 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.27■□□□□ 0.19
TRIM56Q9BRZ2 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
TRIM56Q9BRZ2 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM56Q9BRZ2 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM56Q9BRZ2 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms