Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 AP001527.2-201ENST00000614441 631 ntBASIC15.38■□□□□ 0.05
VPS13AQ96RL7 AP005019.2-201ENST00000615104 511 ntBASIC15.38■□□□□ 0.05
VPS13AQ96RL7 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 AC007787.1-201ENST00000588095 1583 ntBASIC15.38■□□□□ 0.05
VPS13AQ96RL7 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 IGHV3-37-201ENST00000518544 340 ntBASIC15.38■□□□□ 0.05
VPS13AQ96RL7 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 DIO1-215ENST00000610607 796 ntTSL 5 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 CRCP-204ENST00000398684 492 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 AL133466.1-201ENST00000447582 150 ntBASIC15.37■□□□□ 0.05
VPS13AQ96RL7 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 FOS-204ENST00000554617 796 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 AL691432.1-201ENST00000596308 1422 ntBASIC15.37■□□□□ 0.05
VPS13AQ96RL7 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 AC022188.1-201ENST00000620960 1664 ntBASIC15.37■□□□□ 0.05
VPS13AQ96RL7 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC15.37■□□□□ 0.05
VPS13AQ96RL7 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AC105020.1-201ENST00000435356 2205 ntBASIC15.36■□□□□ 0.05
VPS13AQ96RL7 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AC006335.1-201ENST00000445200 547 ntBASIC15.36■□□□□ 0.05
VPS13AQ96RL7 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 RPL18P13-201ENST00000478088 569 ntBASIC15.36■□□□□ 0.05
VPS13AQ96RL7 KRT18P25-201ENST00000508931 1278 ntBASIC15.36■□□□□ 0.05
VPS13AQ96RL7 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 CAP2P1-201ENST00000557743 1390 ntBASIC15.36■□□□□ 0.05
VPS13AQ96RL7 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.36■□□□□ 0.05
VPS13AQ96RL7 AL805961.1-203ENST00000641078 1258 ntBASIC15.36■□□□□ 0.05
VPS13AQ96RL7 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms