Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ZNF549Q6P9A3 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 PHKG1P2-201ENST00000457537 863 ntBASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 AL450472.2-201ENST00000603663 1156 ntBASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 AC026979.3-201ENST00000607315 403 ntBASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ZNF549Q6P9A3 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 AC068587.6-202ENST00000641839 5619 ntBASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 AC097359.3-201ENST00000603982 1210 ntBASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 AL133215.2-201ENST00000609242 977 ntBASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
ZNF549Q6P9A3 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 AZGP1P1-201ENST00000411909 902 ntBASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 AC023141.5-201ENST00000458585 616 ntBASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 HNRNPUP1-201ENST00000554987 333 ntBASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.77■□□□□ 0.12
ZNF549Q6P9A3 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms