Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 DGCR5-201ENST00000399539 862 ntBASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 AC093724.1-201ENST00000448659 1027 ntBASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 RN7SL618P-201ENST00000477850 296 ntBASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 PPT1-215ENST00000641471 2368 ntBASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 AC022532.1-201ENST00000624563 1728 ntBASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CCDC144BQ3MJ40 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 DFFBP1-201ENST00000433250 979 ntBASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 U91328.1-201ENST00000437528 223 ntBASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 AC004790.1-201ENST00000612686 536 ntBASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 STK24-203ENST00000397517 4578 ntTSL 2 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 AL512652.2-201ENST00000625156 1716 ntBASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CCDC144BQ3MJ40 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 SPDYE19P-201ENST00000338590 713 ntBASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 AC098614.1-201ENST00000368528 745 ntBASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 AC044860.1-202ENST00000559481 777 ntBASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 AL139011.1-202ENST00000642063 584 ntBASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms