Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
ABCA4P78363 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA4P78363 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
ABCA4P78363 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC13.66□□□□□ -0.22
ABCA4P78363 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.66□□□□□ -0.22
ABCA4P78363 AC022137.2-201ENST00000503482 481 ntBASIC13.66□□□□□ -0.22
ABCA4P78363 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.66□□□□□ -0.22
ABCA4P78363 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.66□□□□□ -0.22
ABCA4P78363 AC079316.1-201ENST00000548397 411 ntBASIC13.66□□□□□ -0.22
ABCA4P78363 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.66□□□□□ -0.22
ABCA4P78363 BRI3BPP1-201ENST00000594224 787 ntBASIC13.66□□□□□ -0.22
ABCA4P78363 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC13.66□□□□□ -0.22
ABCA4P78363 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC13.66□□□□□ -0.22
ABCA4P78363 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC13.66□□□□□ -0.22
ABCA4P78363 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC13.66□□□□□ -0.22
ABCA4P78363 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
ABCA4P78363 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 PGR-209ENST00000617858 2816 ntTSL 5 BASIC13.66□□□□□ -0.22
ABCA4P78363 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.66□□□□□ -0.22
ABCA4P78363 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC13.66□□□□□ -0.22
ABCA4P78363 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
ABCA4P78363 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.66□□□□□ -0.22
ABCA4P78363 KLF2P4-201ENST00000451959 1225 ntBASIC13.66□□□□□ -0.22
ABCA4P78363 KRT8P13-201ENST00000463294 1010 ntBASIC13.66□□□□□ -0.22
ABCA4P78363 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.66□□□□□ -0.22
ABCA4P78363 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC13.66□□□□□ -0.22
ABCA4P78363 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC13.66□□□□□ -0.22
ABCA4P78363 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
ABCA4P78363 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
ABCA4P78363 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA4P78363 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
ABCA4P78363 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA4P78363 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
ABCA4P78363 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA4P78363 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13.65□□□□□ -0.22
ABCA4P78363 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 RPL13P2-201ENST00000440687 659 ntBASIC13.65□□□□□ -0.22
ABCA4P78363 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA4P78363 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC13.65□□□□□ -0.22
ABCA4P78363 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
ABCA4P78363 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA4P78363 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA4P78363 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA4P78363 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
ABCA4P78363 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 FLJ38576-201ENST00000623820 2459 ntBASIC13.65□□□□□ -0.22
ABCA4P78363 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA4P78363 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
ABCA4P78363 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 LTB4R2-202ENST00000528054 3092 ntBASIC13.65□□□□□ -0.22
ABCA4P78363 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA4P78363 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.65□□□□□ -0.22
ABCA4P78363 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA4P78363 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA4P78363 GPAA1P2-201ENST00000417923 928 ntBASIC13.65□□□□□ -0.22
ABCA4P78363 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.65□□□□□ -0.22
ABCA4P78363 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms