Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
MSH6P52701 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC21.65■■□□□ 1.06
MSH6P52701 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH6P52701 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH6P52701 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH6P52701 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC21.65■■□□□ 1.06
MSH6P52701 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC21.65■■□□□ 1.06
MSH6P52701 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC21.65■■□□□ 1.06
MSH6P52701 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC21.65■■□□□ 1.06
MSH6P52701 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC21.65■■□□□ 1.06
MSH6P52701 NCK2-206ENST00000522586 490 ntTSL 5 BASIC21.65■■□□□ 1.06
MSH6P52701 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC21.65■■□□□ 1.06
MSH6P52701 PPY2P-201ENST00000582808 702 ntBASIC21.65■■□□□ 1.06
MSH6P52701 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH6P52701 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
MSH6P52701 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC21.65■■□□□ 1.06
MSH6P52701 AF254983.2-201ENST00000612331 135 ntBASIC21.65■■□□□ 1.06
MSH6P52701 RN7SL736P-201ENST00000613111 269 ntBASIC21.65■■□□□ 1.06
MSH6P52701 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC21.65■■□□□ 1.06
MSH6P52701 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
MSH6P52701 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH6P52701 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH6P52701 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH6P52701 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
MSH6P52701 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH6P52701 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH6P52701 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC21.65■■□□□ 1.06
MSH6P52701 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH6P52701 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH6P52701 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.06
MSH6P52701 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH6P52701 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH6P52701 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC21.64■■□□□ 1.06
MSH6P52701 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC21.64■■□□□ 1.06
MSH6P52701 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH6P52701 AC011491.1-203ENST00000637688 543 ntBASIC21.64■■□□□ 1.06
MSH6P52701 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH6P52701 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH6P52701 HLA-A-202ENST00000376806 1854 ntBASIC21.64■■□□□ 1.05
MSH6P52701 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC21.64■■□□□ 1.05
MSH6P52701 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH6P52701 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH6P52701 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH6P52701 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC21.64■■□□□ 1.05
MSH6P52701 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH6P52701 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC21.64■■□□□ 1.05
MSH6P52701 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC21.63■■□□□ 1.05
MSH6P52701 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC21.63■■□□□ 1.05
MSH6P52701 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 AC134407.2-201ENST00000625089 1978 ntBASIC21.63■■□□□ 1.05
MSH6P52701 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC21.63■■□□□ 1.05
MSH6P52701 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
MSH6P52701 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC21.63■■□□□ 1.05
MSH6P52701 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
MSH6P52701 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC21.63■■□□□ 1.05
MSH6P52701 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC21.63■■□□□ 1.05
MSH6P52701 PGAM1P5-201ENST00000548011 764 ntBASIC21.63■■□□□ 1.05
MSH6P52701 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
MSH6P52701 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
MSH6P52701 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC21.63■■□□□ 1.05
MSH6P52701 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
MSH6P52701 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC21.63■■□□□ 1.05
MSH6P52701 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC21.63■■□□□ 1.05
MSH6P52701 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH6P52701 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
MSH6P52701 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC21.63■■□□□ 1.05
MSH6P52701 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC21.63■■□□□ 1.05
MSH6P52701 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC21.63■■□□□ 1.05
MSH6P52701 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
MSH6P52701 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC21.62■■□□□ 1.05
MSH6P52701 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC21.62■■□□□ 1.05
MSH6P52701 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC21.62■■□□□ 1.05
MSH6P52701 AC013355.1-201ENST00000562625 723 ntBASIC21.62■■□□□ 1.05
MSH6P52701 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
MSH6P52701 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 TBCB-211ENST00000589996 724 ntTSL 3 BASIC21.62■■□□□ 1.05
MSH6P52701 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
MSH6P52701 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC21.62■■□□□ 1.05
MSH6P52701 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
MSH6P52701 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms