Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.65■□□□□ 0.1
CXCL12P48061 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.65■□□□□ 0.1
CXCL12P48061 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 RNF216P1-203ENST00000404404 2427 ntBASIC15.65■□□□□ 0.1
CXCL12P48061 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CXCL12P48061 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.65■□□□□ 0.1
CXCL12P48061 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.65■□□□□ 0.1
CXCL12P48061 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
CXCL12P48061 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC15.65■□□□□ 0.1
CXCL12P48061 POM121L10P-201ENST00000436994 1285 ntBASIC15.65■□□□□ 0.1
CXCL12P48061 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC15.65■□□□□ 0.1
CXCL12P48061 RN7SL769P-201ENST00000469386 295 ntBASIC15.65■□□□□ 0.1
CXCL12P48061 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.65■□□□□ 0.1
CXCL12P48061 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC15.65■□□□□ 0.1
CXCL12P48061 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC15.65■□□□□ 0.1
CXCL12P48061 NDUFV2P1-201ENST00000596415 907 ntBASIC15.65■□□□□ 0.1
CXCL12P48061 DIO1-215ENST00000610607 796 ntTSL 5 BASIC15.65■□□□□ 0.1
CXCL12P48061 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CXCL12P48061 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
CXCL12P48061 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CXCL12P48061 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CXCL12P48061 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 AL354989.2-201ENST00000435838 1540 ntBASIC15.64■□□□□ 0.09
CXCL12P48061 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 AC078925.2-201ENST00000624013 1973 ntBASIC15.64■□□□□ 0.09
CXCL12P48061 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CXCL12P48061 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CXCL12P48061 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
CXCL12P48061 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 TPM3P8-201ENST00000330554 643 ntBASIC15.64■□□□□ 0.09
CXCL12P48061 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC15.64■□□□□ 0.09
CXCL12P48061 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
CXCL12P48061 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
CXCL12P48061 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 GGCT-203ENST00000409144 836 ntTSL 2 BASIC15.64■□□□□ 0.09
CXCL12P48061 HINT2P1-201ENST00000419438 481 ntBASIC15.64■□□□□ 0.09
CXCL12P48061 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15.64■□□□□ 0.09
CXCL12P48061 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.64■□□□□ 0.09
CXCL12P48061 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
CXCL12P48061 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC15.64■□□□□ 0.09
CXCL12P48061 MPRIPP1-201ENST00000452433 1089 ntBASIC15.64■□□□□ 0.09
CXCL12P48061 GAPDHP40-201ENST00000505218 1006 ntBASIC15.64■□□□□ 0.09
CXCL12P48061 AC126915.1-201ENST00000522847 1038 ntBASIC15.64■□□□□ 0.09
CXCL12P48061 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.64■□□□□ 0.09
CXCL12P48061 MIR3619-201ENST00000579667 83 ntBASIC15.64■□□□□ 0.09
CXCL12P48061 NKG7-204ENST00000595217 816 ntTSL 2 BASIC15.64■□□□□ 0.09
CXCL12P48061 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.64■□□□□ 0.09
CXCL12P48061 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.64■□□□□ 0.09
CXCL12P48061 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 AL133373.2-201ENST00000623187 2828 ntBASIC15.64■□□□□ 0.09
CXCL12P48061 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CXCL12P48061 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
CXCL12P48061 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CXCL12P48061 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CXCL12P48061 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CXCL12P48061 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CXCL12P48061 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CXCL12P48061 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CXCL12P48061 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CXCL12P48061 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CXCL12P48061 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC15.63■□□□□ 0.09
CXCL12P48061 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms