Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 GPALPP1-207ENST00000611650 899 ntBASIC15.49■□□□□ 0.07
HNF4AP41235 AC006538.3-201ENST00000612495 578 ntBASIC15.49■□□□□ 0.07
HNF4AP41235 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.49■□□□□ 0.07
HNF4AP41235 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.49■□□□□ 0.07
HNF4AP41235 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.49■□□□□ 0.07
HNF4AP41235 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.49■□□□□ 0.07
HNF4AP41235 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
HNF4AP41235 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
HNF4AP41235 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
HNF4AP41235 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.48■□□□□ 0.07
HNF4AP41235 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
HNF4AP41235 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.48■□□□□ 0.07
HNF4AP41235 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.48■□□□□ 0.07
HNF4AP41235 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.48■□□□□ 0.07
HNF4AP41235 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.48■□□□□ 0.07
HNF4AP41235 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
HNF4AP41235 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.48■□□□□ 0.07
HNF4AP41235 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
HNF4AP41235 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.48■□□□□ 0.07
HNF4AP41235 RARRES2P9-201ENST00000565168 469 ntBASIC15.48■□□□□ 0.07
HNF4AP41235 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.48■□□□□ 0.07
HNF4AP41235 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.48■□□□□ 0.07
HNF4AP41235 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
HNF4AP41235 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
HNF4AP41235 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.48■□□□□ 0.07
HNF4AP41235 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
HNF4AP41235 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
HNF4AP41235 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HNF4AP41235 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
HNF4AP41235 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.47■□□□□ 0.07
HNF4AP41235 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.47■□□□□ 0.07
HNF4AP41235 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.47■□□□□ 0.07
HNF4AP41235 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.47■□□□□ 0.07
HNF4AP41235 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.47■□□□□ 0.07
HNF4AP41235 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
HNF4AP41235 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.47■□□□□ 0.07
HNF4AP41235 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.47■□□□□ 0.07
HNF4AP41235 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
HNF4AP41235 GPS2P2-201ENST00000430745 888 ntBASIC15.47■□□□□ 0.07
HNF4AP41235 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.47■□□□□ 0.07
HNF4AP41235 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.47■□□□□ 0.07
HNF4AP41235 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.47■□□□□ 0.07
HNF4AP41235 BNIP3P1-202ENST00000550043 1585 ntBASIC15.47■□□□□ 0.07
HNF4AP41235 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.47■□□□□ 0.07
HNF4AP41235 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.47■□□□□ 0.07
HNF4AP41235 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 AC003101.2-201ENST00000612557 442 ntBASIC15.47■□□□□ 0.07
HNF4AP41235 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.47■□□□□ 0.07
HNF4AP41235 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.47■□□□□ 0.07
HNF4AP41235 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 AC009093.7-201ENST00000623853 1223 ntBASIC15.47■□□□□ 0.07
HNF4AP41235 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.47■□□□□ 0.07
HNF4AP41235 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
HNF4AP41235 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.47■□□□□ 0.07
HNF4AP41235 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
HNF4AP41235 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.47■□□□□ 0.07
HNF4AP41235 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.47■□□□□ 0.07
HNF4AP41235 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.47■□□□□ 0.07
HNF4AP41235 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms