Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
CUX1P39880 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 AC080080.1-201ENST00000625121 2420 ntBASIC25.99■■□□□ 1.75
CUX1P39880 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
CUX1P39880 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 NDUFAB1P1-201ENST00000404262 460 ntBASIC25.98■■□□□ 1.75
CUX1P39880 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC25.98■■□□□ 1.75
CUX1P39880 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC25.98■■□□□ 1.75
CUX1P39880 RN7SL11P-201ENST00000471305 293 ntBASIC25.98■■□□□ 1.75
CUX1P39880 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 NUP210P1-202ENST00000504322 710 ntBASIC25.98■■□□□ 1.75
CUX1P39880 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC25.98■■□□□ 1.75
CUX1P39880 MIR5572-201ENST00000583188 137 ntBASIC25.98■■□□□ 1.75
CUX1P39880 AL133499.1-201ENST00000596207 608 ntBASIC25.98■■□□□ 1.75
CUX1P39880 AC004466.1-201ENST00000599515 1080 ntBASIC25.98■■□□□ 1.75
CUX1P39880 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC25.98■■□□□ 1.75
CUX1P39880 TUBBP5-203ENST00000508529 1334 ntBASIC25.98■■□□□ 1.75
CUX1P39880 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
CUX1P39880 ATP6V0CP2-201ENST00000469409 207 ntBASIC25.98■■□□□ 1.75
CUX1P39880 AC024681.1-201ENST00000521917 487 ntBASIC25.98■■□□□ 1.75
CUX1P39880 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC25.98■■□□□ 1.75
CUX1P39880 AC079336.7-201ENST00000623428 1078 ntBASIC25.98■■□□□ 1.75
CUX1P39880 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 AC018695.7-201ENST00000624587 2492 ntBASIC25.98■■□□□ 1.75
CUX1P39880 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CUX1P39880 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CUX1P39880 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CUX1P39880 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC25.97■■□□□ 1.75
CUX1P39880 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
CUX1P39880 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC25.97■■□□□ 1.75
CUX1P39880 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC25.97■■□□□ 1.75
CUX1P39880 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
CUX1P39880 AL645937.2-201ENST00000396808 931 ntBASIC25.97■■□□□ 1.75
CUX1P39880 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
CUX1P39880 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
CUX1P39880 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC25.97■■□□□ 1.75
CUX1P39880 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC25.97■■□□□ 1.75
CUX1P39880 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC25.97■■□□□ 1.75
CUX1P39880 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CUX1P39880 AC134698.3-201ENST00000523880 214 ntBASIC25.97■■□□□ 1.75
CUX1P39880 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC25.97■■□□□ 1.75
CUX1P39880 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC25.97■■□□□ 1.75
CUX1P39880 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC25.97■■□□□ 1.75
CUX1P39880 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CUX1P39880 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CUX1P39880 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CUX1P39880 ANKRD30BP2-201ENST00000435744 1610 ntBASIC25.96■■□□□ 1.75
CUX1P39880 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC25.96■■□□□ 1.75
CUX1P39880 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CUX1P39880 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC25.96■■□□□ 1.75
CUX1P39880 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC25.96■■□□□ 1.75
CUX1P39880 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CUX1P39880 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CUX1P39880 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CUX1P39880 MIR769-201ENST00000390225 118 ntBASIC25.96■■□□□ 1.75
CUX1P39880 CRCP-204ENST00000398684 492 ntTSL 2 BASIC25.96■■□□□ 1.75
CUX1P39880 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC25.96■■□□□ 1.75
CUX1P39880 LDHBP1-201ENST00000455730 1119 ntBASIC25.96■■□□□ 1.75
CUX1P39880 PFN2-205ENST00000461868 613 ntTSL 2 BASIC25.96■■□□□ 1.75
CUX1P39880 CFL1-214ENST00000534769 758 ntTSL 2 BASIC25.96■■□□□ 1.75
CUX1P39880 AC026740.1-201ENST00000607068 791 ntBASIC25.96■■□□□ 1.75
CUX1P39880 AP000346.4-201ENST00000614827 381 ntBASIC25.96■■□□□ 1.75
CUX1P39880 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC25.96■■□□□ 1.75
CUX1P39880 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
CUX1P39880 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CUX1P39880 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CUX1P39880 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC25.96■■□□□ 1.75
CUX1P39880 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CUX1P39880 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
CUX1P39880 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC25.95■■□□□ 1.75
CUX1P39880 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
CUX1P39880 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
CUX1P39880 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CUX1P39880 AL136309.1-201ENST00000403917 691 ntBASIC25.95■■□□□ 1.74
CUX1P39880 PARVG-202ENST00000415224 999 ntTSL 2 BASIC25.95■■□□□ 1.74
CUX1P39880 RN7SL774P-201ENST00000577467 290 ntBASIC25.95■■□□□ 1.74
CUX1P39880 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC25.95■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms