Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHMT2P34897 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
SHMT2P34897 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHMT2P34897 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.61■□□□□ 0.09
SHMT2P34897 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.61■□□□□ 0.09
SHMT2P34897 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SHMT2P34897 AC093214.1-201ENST00000511688 1107 ntBASIC15.61■□□□□ 0.09
SHMT2P34897 RNA5SP421-201ENST00000516864 134 ntBASIC15.61■□□□□ 0.09
SHMT2P34897 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.61■□□□□ 0.09
SHMT2P34897 AL138828.2-201ENST00000615812 383 ntBASIC15.61■□□□□ 0.09
SHMT2P34897 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.61■□□□□ 0.09
SHMT2P34897 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SHMT2P34897 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.61■□□□□ 0.09
SHMT2P34897 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHMT2P34897 TNRC18P2-201ENST00000417666 2714 ntBASIC15.61■□□□□ 0.09
SHMT2P34897 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHMT2P34897 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SHMT2P34897 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
SHMT2P34897 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHMT2P34897 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.61■□□□□ 0.09
SHMT2P34897 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHMT2P34897 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
SHMT2P34897 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHMT2P34897 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
SHMT2P34897 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHMT2P34897 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHMT2P34897 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.6■□□□□ 0.09
SHMT2P34897 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.6■□□□□ 0.09
SHMT2P34897 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 AP001282.1-201ENST00000531301 1499 ntBASIC15.6■□□□□ 0.09
SHMT2P34897 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.6■□□□□ 0.09
SHMT2P34897 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.6■□□□□ 0.09
SHMT2P34897 AC004987.2-201ENST00000395959 1148 ntBASIC15.6■□□□□ 0.09
SHMT2P34897 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.6■□□□□ 0.09
SHMT2P34897 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SHMT2P34897 AC092580.3-201ENST00000430932 139 ntBASIC15.6■□□□□ 0.09
SHMT2P34897 AC241585.1-201ENST00000433527 519 ntBASIC15.6■□□□□ 0.09
SHMT2P34897 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 SERBP1P3-201ENST00000459980 809 ntBASIC15.6■□□□□ 0.09
SHMT2P34897 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SHMT2P34897 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.6■□□□□ 0.09
SHMT2P34897 AC011467.4-201ENST00000594891 528 ntBASIC15.6■□□□□ 0.09
SHMT2P34897 AL390754.1-201ENST00000619088 582 ntBASIC15.6■□□□□ 0.09
SHMT2P34897 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SHMT2P34897 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.6■□□□□ 0.09
SHMT2P34897 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.6■□□□□ 0.09
SHMT2P34897 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 CYP4F24P-201ENST00000586049 1580 ntBASIC15.6■□□□□ 0.09
SHMT2P34897 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.6■□□□□ 0.09
SHMT2P34897 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.6■□□□□ 0.09
SHMT2P34897 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.6■□□□□ 0.09
SHMT2P34897 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 AC099063.4-201ENST00000641099 1602 ntBASIC15.6■□□□□ 0.09
SHMT2P34897 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
SHMT2P34897 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHMT2P34897 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.6■□□□□ 0.09
SHMT2P34897 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.6■□□□□ 0.09
SHMT2P34897 AL691432.1-201ENST00000596308 1422 ntBASIC15.6■□□□□ 0.09
SHMT2P34897 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.6■□□□□ 0.09
SHMT2P34897 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.6■□□□□ 0.09
SHMT2P34897 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHMT2P34897 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHMT2P34897 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.59■□□□□ 0.09
SHMT2P34897 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
SHMT2P34897 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
SHMT2P34897 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SHMT2P34897 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.59■□□□□ 0.09
SHMT2P34897 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.59■□□□□ 0.09
SHMT2P34897 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
SHMT2P34897 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.59■□□□□ 0.09
SHMT2P34897 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.59■□□□□ 0.09
SHMT2P34897 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHMT2P34897 SPDYE17-201ENST00000412399 783 ntBASIC15.59■□□□□ 0.09
SHMT2P34897 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.59■□□□□ 0.09
SHMT2P34897 AL080243.2-201ENST00000418783 582 ntBASIC15.59■□□□□ 0.09
SHMT2P34897 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.59■□□□□ 0.09
SHMT2P34897 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.59■□□□□ 0.09
SHMT2P34897 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.59■□□□□ 0.09
SHMT2P34897 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.59■□□□□ 0.09
SHMT2P34897 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.59■□□□□ 0.09
SHMT2P34897 AL390955.2-201ENST00000603032 514 ntBASIC15.59■□□□□ 0.09
SHMT2P34897 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.59■□□□□ 0.09
SHMT2P34897 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15.59■□□□□ 0.09
SHMT2P34897 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms